BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 577278	432 (0.700)	25 (0.050)	9/96	NT	6.3%	pseudogene (163/438 nt)	tfaD	pseudogene, DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related
*	?	CP009273	= 1426905	NA (NA)	25 (0.050)	9/96	NT	6.3%	coding (238/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein

Only 100 of 317 total aligned reads displayed.

AGCGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/577205‑577278

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggaagCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  <  CP009273/1426905‑1426839

AGCGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGC                                                                           <  1:42572032/68‑1

AGCGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGC                                                                           <  1:43626509/68‑1

AGCGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCG                                                                            >  1:23770512/1‑67

AGCGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCG                                                                            >  1:22920946/1‑67

  CGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCG                                                                         >  1:28014020/1‑68

  CGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCG                                                                         >  1:13454609/1‑68

  CGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCG                                                                         >  1:18082073/1‑68

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGG                                                                        >  1:10195353/1‑68

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGG                                                                        >  1:32025032/1‑68

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGG                                                                        >  1:3693340/1‑68

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGG                                                                        >  1:9275932/1‑68

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGG                                                                        >  1:6871870/1‑68

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGG                                                                        >  1:25862447/1‑68

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGG                                                                        >  1:16732122/1‑68

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGG                                                                        >  1:46438140/1‑68

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCG                                                                         <  1:44825420/67‑1

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTAACTGGTTATCGCCGG                                                                        >  1:3919018/1‑68

    TCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGA                                                                       >  1:25647906/1‑68

    TCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGA                                                                       >  1:24895629/1‑68

     CAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAA                                                                      <  1:36016782/68‑1

     CAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGA                                                                       <  1:15883705/67‑1

      AGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAG                                                                     >  1:21304349/1‑68

            CGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGCCACGT                                                               <  1:18395507/68‑1

            CGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGCCACGT                                                               <  1:10904776/68‑1

            CGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGCCACGT                                                               <  1:14053860/68‑1

             GCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGCCACGTC                                                              <  1:42255754/68‑1

             GCGTTAATTATTTCTGAACTCGGGCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGCCACGTC                                                              <  1:43197932/68‑1

                      ATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGCCACGTCATAAACCGT                                                     <  1:19531302/68‑1

                              ACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGCCACGTCATAAACCGTTTTACCCC                                             <  1:24301876/68‑1

                                 CGGTCCGTTACCGCAAAATGTAACCTGGTTATCGCCGGAAGCCACGTCATAAACCGTTTTACCCCGAT                                          <  1:27386341/68‑1

                                                                 CGCCGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATC           <  1:51050863/67‑1

                                                                  GCCGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATC           >  1:34284346/1‑66

                                                                   CCGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        >  1:31630221/1‑68

                                                                   CCGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATC           >  1:49739629/1‑65

                                                                    CGGAAGCCACGTCATATAGCGTTTTACCCCTATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:14996610/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCAtt        <  1:36520032/67‑3

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTG       <  1:22417265/68‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTG       <  1:10018296/68‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:33604458/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:37327456/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:38062418/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:40293410/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:41084185/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:8759959/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:4884178/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:47462490/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:46693328/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:5710503/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:44687577/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:6364510/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:5840752/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:9491609/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:3326674/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:22751322/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:23843489/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:25197840/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:25458989/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:20291016/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:19759990/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:17985973/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:14287363/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:3234940/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:11840073/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATC           >  1:9019415/1‑64

                                                                    CGGAAGCCACGGCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTG       <  1:39938147/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:17316636/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:17664595/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:5119606/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:19036268/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:7224542/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:47736222/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:19992740/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:2209361/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:45757264/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:8284456/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:32724668/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:29879585/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:31487638/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:3673513/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:31208394/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:30766209/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:32610186/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:34014093/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:29559429/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:41637561/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:45412752/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:2615600/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:42956356/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGACGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:47982299/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTAACCCGATTATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:28827772/68‑1

                                                                        AGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGA   <  1:49487375/68‑1

                                                                        AGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGA   <  1:35328337/68‑1

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:10958337/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:1121281/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:16271085/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:30108527/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:38438192/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:26920350/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATAACTGTTGAA  >  1:7698995/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACCAGATGCCACGATGACTCATCACTGTTGAA  >  1:49941501/1‑68

AGCGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/577205‑577278

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggaagCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  <  CP009273/1426905‑1426839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.