| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 577278 | 432 (0.700) | 25 (0.050) | 9/96 | NT | 6.3% | pseudogene (163/438 nt) | tfaD | pseudogene, DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
| ? | CP009273 | = 1426905 | NA (NA) | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein | |||||
Only 100 of 554 total aligned reads displayed.
GATGAGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGC > CP009273/1426848‑1426971 | tgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcg < 1:19896276/68‑1 (MQ=35) tgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAc > 1:33772412/1‑67 (MQ=35) tgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAc > 1:26955273/1‑67 (MQ=35) ggaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcg < 1:3112937/67‑1 (MQ=25) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc > 1:6167992/1‑68 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:41000320/68‑1 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:35202298/68‑1 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:29595437/68‑1 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:6565576/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:10701737/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:12821235/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:34826826/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:30385915/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:23495153/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATC‑GGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGtt > 1:17274141/1‑68 (MQ=255) gTCATCGTGGCATCTCGTTGAAGATAATCGGGGTAAAACGGTTTATGACGTGGCTTCAGTCAACGCGt > 1:10275718/1‑68 (MQ=11) tCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGtt > 1:35414794/1‑68 (MQ=35) cATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGtta > 1:49344906/1‑68 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:42486445/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:11756969/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:20736738/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:24808397/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:221453/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:24414438/68‑1 (MQ=35) cGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttattt > 1:4335567/1‑68 (MQ=35) cGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttattt > 1:3212504/1‑68 (MQ=35) cGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttattt > 1:25314992/1‑68 (MQ=35) cGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttattt < 1:22829156/68‑1 (MQ=35) gTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttattta > 1:24014555/1‑68 (MQ=35) tGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttatttat > 1:27662113/1‑68 (MQ=35) tGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttatttat > 1:50828886/1‑68 (MQ=35) tGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttatttat > 1:1450102/1‑68 (MQ=35) tGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttatttat > 1:44332430/1‑68 (MQ=35) ggCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt < 1:3402466/68‑1 (MQ=35) ggCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt < 1:13107950/68‑1 (MQ=35) ggCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt < 1:47821695/68‑1 (MQ=35) ggCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt < 1:47067968/68‑1 (MQ=35) ggCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:18273975/1‑68 (MQ=35) ggCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt < 1:5581962/68‑1 (MQ=35) cATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTatttattt < 1:4282948/67‑1 (MQ=35) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:14874472/1‑65 (MQ=35) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTc < 1:11959867/67‑1 (MQ=35) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTc < 1:5969582/67‑1 (MQ=35) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTc < 1:48984259/67‑1 (MQ=35) aTCTCGTTGAAGATCATCGGGGTAAAACGGGTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:36064272/1‑65 (MQ=255) ctcGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGa > 1:1870097/1‑68 (MQ=35) aaGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCgg > 1:16656147/1‑67 (MQ=35) aaGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCgg > 1:3016106/1‑67 (MQ=35) aaGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCgg > 1:11304534/1‑67 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACt > 1:6951751/1‑63 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:39379330/67‑1 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:40522587/67‑1 (MQ=35) tcatcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGt > 1:5280282/1‑68 (MQ=35) atcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGtt > 1:29377447/1‑67 (MQ=35) tcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTAc < 1:31740962/68‑1 (MQ=35) ggggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCg > 1:21601807/1‑68 (MQ=35) ggggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCg > 1:50526331/1‑68 (MQ=35) ggggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCg > 1:26039504/1‑68 (MQ=35) ggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCgg < 1:7999390/67‑1 (MQ=35) ggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGa > 1:1405578/1‑68 (MQ=35) gTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGCACTCGGTCCGTTACCGGat > 1:37251480/1‑67 (MQ=255) gTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGaa > 1:48593285/1‑68 (MQ=35) aaaaCGGTTTATGACGTGGGTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGGTACCGGaaaa < 1:37969050/68‑1 (MQ=255) aaaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGaaaa < 1:38905823/68‑1 (MQ=35) aaaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGaaaa < 1:38481015/68‑1 (MQ=35) aaaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGaaaa < 1:46567418/68‑1 (MQ=35) aaaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGaaaa > 1:28602044/1‑68 (MQ=35) aaaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGaaaa < 1:43556825/68‑1 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTCCCGGAAAAt < 1:48297698/68‑1 (MQ=255) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:41539866/68‑1 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:4554906/68‑1 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:21118138/68‑1 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:1002429/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:51163779/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:9359015/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:19540879/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:4118441/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:40065781/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:13605398/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:25688091/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:31493255/1‑68 (MQ=35) cGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAATATGtt > 1:15636350/1‑68 (MQ=25) cGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGtt > 1:19167415/1‑68 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTa < 1:18946942/68‑1 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTa < 1:737335/68‑1 (MQ=35) tttATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTAc < 1:26370174/67‑1 (MQ=35) ttATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTa > 1:20494021/1‑65 (MQ=35) aTGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTgg < 1:15094732/68‑1 (MQ=35) gACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGtt > 1:3312214/1‑68 (MQ=35) gACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGtt > 1:28093161/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:17620801/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:8526543/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:9069513/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:4487440/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:49997681/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:36327012/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:37707102/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:39779649/1‑68 (MQ=35) ggCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCg > 1:45871865/1‑67 (MQ=35) ggCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGc < 1:4213024/68‑1 (MQ=35) | GATGAGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGC > CP009273/1426848‑1426971 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |