| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 577278 | 432 (0.700) | 25 (0.050) | 9/96 | NT | 6.3% | pseudogene (163/438 nt) | tfaD | pseudogene, DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
| ? | CP009273 | = 1426905 | NA (NA) | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein | |||||
Only 100 of 764 total aligned reads displayed.
AGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGAT > CP009273/577211‑577345 | gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:43067297/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:42118812/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:2658117/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:25606715/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:23923549/1‑68 (MQ=33) gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATAGCCGGAAggg > 1:9534274/1‑68 (MQ=18) cgcgTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGccacgt < 1:32519906‑M1/68‑7 (MQ=255) cgcgTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGccacgt < 1:14053860‑M1/68‑7 (MQ=255) acgcGGGCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:38287182/64‑1 (MQ=255) aCTCGTTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:37773260/67‑1 (MQ=14) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:24543488/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:33308913/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:43604305/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt > 1:4419723/1‑67 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt > 1:26937318/1‑67 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:23362928/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt > 1:21188507/1‑67 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:15028053/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:18013517/67‑1 (MQ=31) tCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACa > 1:2252582/1‑68 (MQ=35) cGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAg < 1:39057775/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:18390043/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:26337838/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:5026436/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:24404949/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGATACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:13333937/68‑1 (MQ=25) gTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAg > 1:18922029/1‑66 (MQ=35) tCCGTTACCGGAAAATGTTACCTGGTTATCGACTGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:17303433/66‑1 (MQ=255) ccGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCt < 1:5952105/67‑1 (MQ=35) ccGTTACCGGAAAATGTTACCTGGTTATCGACGGAAGccacgtcataaaccgttttaccccgatgat < 1:48021721‑M1/67‑31 (MQ=255) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTgg < 1:10857611/68‑1 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTgg < 1:47165409/68‑1 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTgg < 1:6589093/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:24887178/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:19459705/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:12010476/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:45778651/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:28153886/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:34377423/68‑1 (MQ=35) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGa > 1:15692734/1‑68 (MQ=35) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGa > 1:42769870/1‑68 (MQ=35) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGa > 1:36318400/1‑68 (MQ=35) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGa > 1:7971635/1‑68 (MQ=35) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGa > 1:30646469/1‑68 (MQ=35) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGGTTCAGAAGTGGAACGGTACAGCCTGGGTGa > 1:45092940/1‑68 (MQ=25) aaaaTGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGAt > 1:2605692/1‑68 (MQ=40) aTGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgca > 1:33955034/1‑68 (MQ=255) aTGTAACCTGGTTATCGCAGGTACGGGAGATACAGAAGTGGATCCGTACAGCCTCGGTGAAAGAAgca > 1:7208849/1‑68 (MQ=9) cTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAg > 1:4848946/1‑56 (MQ=40) cTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagcag > 1:29740553/1‑68 (MQ=255) cTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagcag > 1:16027898/1‑68 (MQ=255) cTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagcag > 1:37261900/1‑68 (MQ=255) cTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGAACAGCCTGGGTGAAAGATgcagaagcag > 1:11498057/1‑68 (MQ=255) tGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagcaga < 1:49023223/68‑1 (MQ=255) ggTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagcagaa > 1:4769553/1‑68 (MQ=255) ttATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGaaaa > 1:1438802/1‑68 (MQ=255) tATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGaaaa < 1:30254553/67‑1 (MQ=255) tATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGaaaa < 1:30895174/67‑1 (MQ=255) cGCCGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatc < 1:51050863‑M1/67‑59 (MQ=255) gCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt > 1:8915477/1‑68 (MQ=255) gCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt > 1:46403316/1‑68 (MQ=255) gCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt > 1:27522851/1‑68 (MQ=255) gCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt > 1:17766797/1‑68 (MQ=255) gCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt > 1:31704168/1‑68 (MQ=255) gCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt > 1:20300740/1‑68 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactg < 1:32644459‑M1/68‑63 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactg < 1:10018296‑M1/68‑63 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:41084185‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:25362072‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:21886168‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:29138646‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:5710503‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:40293410‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:36883641‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:36719276‑M1/67‑62 (MQ=255) cGGAAGccacggcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactg < 1:39938147‑M1/68‑63 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:19992740‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:16408448‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:22825836‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:16740901‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:34925433‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:46697770‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:33671068‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:32194769‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:41637561‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:31418505‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:44845688‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaacgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:28768944‑M1/68‑64 (MQ=255) aaGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttg > 1:13069865‑M1/1‑3 (MQ=255) aGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttga < 1:35328337‑M1/68‑67 (MQ=255) aGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttga < 1:49487375‑M1/68‑67 (MQ=255) aGGGGATTTTCTGAAGTGGAACGGTACAGCCTGGGTTAAAGATGCAGAAGCAGAAAAACTGTTCAgg < 1:7525394/67‑1 (MQ=17) aGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCgg < 1:22238510/67‑1 (MQ=255) aGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCgg < 1:8434944/67‑1 (MQ=255) aGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGa < 1:2086799/68‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:5261325‑M1/1‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:11157864‑M1/1‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:35931316‑M1/1‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:4566171‑M1/1‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgagcttcaacgagatgccacgaggactcatcactgttgaa > 1:49795362‑M1/1‑1 (MQ=255) | AGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGAT > CP009273/577211‑577345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |