| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1483947 | NA (NA) | 3 (0.010) | 3/94 | NT | NA | noncoding (8/22 nt) | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 1483953 | NA (NA) | noncoding (14/22 nt) | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 168 total aligned reads displayed.
GTAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1483873‑1483947‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcggaggAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATATTCAT < CP009273/1483953‑1483888 GTAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAG > 1:6564696/1‑68 TAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAG < 1:35985834/67‑1 TAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAG < 1:18791832/67‑1 TAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAG > 1:25940554/1‑67 TAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAG > 1:36270246/1‑67 TAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAG > 1:5459110/1‑67 TAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAG < 1:9592636/67‑1 AAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGC > 1:34965730/1‑68 AAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGG < 1:16181874/67‑1 AAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGG < 1:16241866/67‑1 AACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCG > 1:4887368/1‑68 AACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCG > 1:43082789/1‑68 AACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCG > 1:42187916/1‑68 AACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCG > 1:42099577/1‑68 AACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCG > 1:32936942/1‑68 AACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCG > 1:29691040/1‑68 AACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCG > 1:27467821/1‑68 AACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCG > 1:678798/1‑68 AACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCG > 1:25714745/1‑68 AACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCG > 1:2524296/1‑68 AACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCG > 1:20784935/1‑68 AACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCG > 1:10353954/1‑68 AACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCG > 1:11489332/1‑68 AACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCG > 1:15527113/1‑68 AACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCGTAATGAGTGAAAGAGGCG > 1:47980863/1‑68 AACAAGGCTTGCAAGAATATCAGCAGACCCAGGTGGTTTATTTACACTCTTAATGAGTGAAAGAGGCc > 1:11169689/1‑67 ACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGG > 1:32985675/1‑68 CATGTCTTGCATGAATATCTGCAGACCCAGCTGGTTTATTTACAGTCTTAATGAGTCAAAGAGGCGGA > 1:38955365/1‑68 CATGGCTTGCATGAATATCTGCAGCCCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGA > 1:20190173/1‑68 CATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGA > 1:37481693/1‑68 CATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGA > 1:24204991/1‑68 CATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGA > 1:35145622/1‑68 CATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGA > 1:18093329/1‑68 CATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGA > 1:8268671/1‑68 CATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGA > 1:742558/1‑68 CATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGA > 1:40708816/1‑68 CATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGA > 1:41808360/1‑68 CATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGA > 1:12381373/1‑68 CATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGA > 1:31245016/1‑68 CATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGA > 1:22286649/1‑68 CATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGA > 1:27722001/1‑68 CATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGA > 1:5455353/1‑68 CATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGA > 1:49065754/1‑68 CATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGA > 1:29274861/1‑68 CATGGCTTGCATGAATATCTGCAGACCCAGCTGGTTTATTTACAGTCTGAATGAGTGAAAGAGGCGGA > 1:37342327/1‑68 CATGGCTTGCATGAATATCTGCAGACACAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCtg > 1:38285870/1‑65 aaGGCTTGCATGAATATCTGCAGACCAAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAG > 1:18257291/3‑68 ATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAG > 1:21394198/1‑68 ATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAG > 1:47482193/1‑68 ATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAG > 1:44743269/1‑68 ATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAG > 1:6024535/1‑68 ATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAG > 1:4239412/1‑68 ATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAG > 1:6227695/1‑68 ATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAG > 1:628111/1‑68 ATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAG > 1:9449821/1‑68 ATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAG > 1:2349972/1‑68 ATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAG > 1:19822780/1‑68 ATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAG > 1:13854838/1‑68 ATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAG > 1:27679249/1‑68 ATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAG > 1:29001445/1‑68 ATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAG > 1:30912051/1‑68 ATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGAGAAAGAGGCGGAG > 1:22492313/1‑68 TGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGG > 1:16990322/1‑68 TGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGG > 1:14607536/1‑68 TGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGG < 1:14220286/68‑1 TGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGG < 1:14405164/68‑1 TGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGG > 1:42058379/1‑68 TGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGG < 1:12780712/68‑1 TGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGG > 1:46722658/1‑68 TGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGG > 1:30972248/1‑68 TGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGG < 1:43239825/68‑1 GCAGACCCAGGTGGTTTATTTACAGTCTTAATGCGTGAAAGAGGCGGAGGTAAAAGCGTCCGGCTCTT > 1:35821017/1‑68 GTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGAAAAAACCTCCGGCTCTTTGACTCATTA > 1:23954208/1‑68 GCGGAGGAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATA > 1:34220762/1‑68 GCGGAGGAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATA > 1:12081098/1‑68 CGGAGGGAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATAT > 1:49935875/1‑68 CGGAGGAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATAT > 1:44101334/1‑68 CGGAGGAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATA < 1:25671786/67‑1 CGGAGGAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATA < 1:4492078/67‑1 CGGAGGAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATA < 1:23056486/67‑1 CGGAGGAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGAT < 1:1301459/66‑1 CGGAGGAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGA < 1:26878714/65‑1 CGGAGGAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAG < 1:25107610/64‑1 CGGAGGAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAG < 1:44612982/64‑1 CGGAGGAAAAAACCTCCGCCTCTTCCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATA < 1:49838539/67‑1 GGAGGAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATATT < 1:36470788/68‑1 GGAGGAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATATT < 1:10867982/68‑1 GGAGGAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATAT > 1:10166576/1‑67 GGAGGAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATAT < 1:31966297/67‑1 GGAGGAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATAT < 1:27904117/67‑1 AGGAAAAAACCTCCGCGTCTTTCACTCATTATGACTGTAAATAAACCACCTGGGTCTGCAGATTTTCA > 1:6793445/1‑68 AGGAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATATTCA > 1:41187270/1‑68 AGGAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATATTCA > 1:12331050/1‑68 GGAAAAAACCTTCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATATTCA < 1:49639729/67‑1 GAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATATTCAT > 1:4447822/1‑67 GAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATATTCAT > 1:7159286/1‑67 GAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATATTCAT > 1:23148653/1‑67 GAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATATTCAT > 1:35470741/1‑67 GAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATATTCAT > 1:27548751/1‑67 GAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATATTCAT > 1:49410959/1‑67 GTAAACATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1483873‑1483947‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcggaggAAAAAACCTCCGCCTCTTTCACTCATTAAGACTGTAAATAAACCACCTGGGTCTGCAGATATTCAT < CP009273/1483953‑1483888 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |