| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1483947 | NA (NA) | 3 (0.010) | 3/94 | NT | NA | noncoding (8/22 nt) | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 1483953 | NA (NA) | noncoding (14/22 nt) | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 817 total aligned reads displayed.
CATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCC > CP009273/1483887‑1484020 | aTGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTc > 1:35470741‑M2/1‑66 (MQ=255) tatCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcctccgc > 1:42216316‑M2/1‑61 (MQ=255) tatCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcctccg < 1:14776278‑M2/67‑7 (MQ=255) tGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:18355778/1‑68 (MQ=255) gCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:824760/1‑67 (MQ=255) gCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:32528031/1‑67 (MQ=255) gCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:6550834/1‑67 (MQ=255) gCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:42455840/1‑67 (MQ=255) gCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:44554713/1‑67 (MQ=255) aCCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg > 1:3819255/1‑68 (MQ=255) aCCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTACGCCTGTGcgcg > 1:49643210/1‑68 (MQ=255) cccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTgcgc < 1:20418107/66‑1 (MQ=255) cccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg > 1:47509368/1‑67 (MQ=255) cccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg > 1:27687404/1‑67 (MQ=255) cccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg > 1:28218481/1‑67 (MQ=255) cccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg > 1:2358817/1‑67 (MQ=255) cccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg > 1:12635195/1‑67 (MQ=255) cccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg < 1:47783210/67‑1 (MQ=255) cccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg < 1:5140008/67‑1 (MQ=255) cccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg > 1:16025873/1‑67 (MQ=255) cccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCACCGCCTGTGCGCGt > 1:11226619/1‑68 (MQ=255) gtggtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCagag > 1:5636903/1‑68 (MQ=255) gtggtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCagag > 1:9655865/1‑68 (MQ=255) gtggtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCagag > 1:22633877/1‑68 (MQ=255) ggtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGtt > 1:16474825/1‑68 (MQ=255) tttatttaCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCACCTGTGCGCGTCAGAGTTTa > 1:11605516/1‑68 (MQ=255) ttatttaCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAg < 1:35988627/68‑1 (MQ=255) tatttaCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGc > 1:7282892/1‑68 (MQ=255) ttaCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGaa > 1:46205705/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAt > 1:43381440/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAt > 1:6077323/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAt > 1:47149536/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAt > 1:483431/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAt > 1:10368214/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGGGCGCGTCAGACTTAAGCGAAt > 1:12092432/1‑68 (MQ=255) aCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAtt < 1:42990376/68‑1 (MQ=255) aGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAtttt > 1:24935880/1‑68 (MQ=255) gTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAtttt > 1:34018195/1‑67 (MQ=255) gTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAtttt > 1:21644610/1‑67 (MQ=255) gTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAtttt > 1:50113907/1‑67 (MQ=255) tCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTc > 1:31213136/1‑68 (MQ=255) aaTGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAgg > 1:2727737/1‑68 (MQ=255) aaTGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAgg > 1:20810959/1‑68 (MQ=255) aTGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAggg < 1:49356291/68‑1 (MQ=255) tGAGTGAAAGAGGCTGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:48714472/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt < 1:44754815/68‑1 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt < 1:50523353/68‑1 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:28441707/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:29878380/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:15142774/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:31447972/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:12947515/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTACTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:25715610/1‑68 (MQ=255) tGAGAGAAAGAGGCGGAGGTTGTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt < 1:33605401/68‑1 (MQ=255) aGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGc > 1:15606602/1‑68 (MQ=255) aGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGc > 1:17832055/1‑68 (MQ=255) aGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGc > 1:19671943/1‑68 (MQ=255) aGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGc > 1:50947535/1‑68 (MQ=255) aGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGc > 1:346212/1‑68 (MQ=255) aGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGc > 1:31992867/1‑68 (MQ=255) aGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTATAGCGAATTTTTCGAGGGTGc > 1:19249725/1‑68 (MQ=255) gAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCg < 1:4672454/66‑1 (MQ=255) gAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCg < 1:44200833/66‑1 (MQ=255) gAAAGAGGCGGAGGTTTTTTCCACCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGaa < 1:14297595/68‑1 (MQ=255) aaGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATa > 1:8521285/1‑68 (MQ=255) agagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:8990/1‑68 (MQ=255) agagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa < 1:45492683/68‑1 (MQ=255) agagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:2008292/1‑68 (MQ=255) agagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:13371732/1‑68 (MQ=255) agagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:41215555/1‑68 (MQ=255) agagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa < 1:40700372/68‑1 (MQ=255) agagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:7759547/1‑68 (MQ=255) agagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:37895540/1‑68 (MQ=255) agagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTGCGAGGGTGCGATTaa > 1:2540425/1‑68 (MQ=255) gagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:29104132/1‑67 (MQ=255) agGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:393722/1‑66 (MQ=255) agGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:18728952/1‑66 (MQ=255) agGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:30938553/1‑66 (MQ=255) ggCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGc < 1:24348263/67‑1 (MQ=255) ggCGGAGGTGTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGc < 1:27943380/67‑1 (MQ=255) cGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtg < 1:23166480/67‑1 (MQ=255) cGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCt < 1:21131059/66‑1 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:41590116/67‑1 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:10871085/67‑1 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:7018427/67‑1 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:17386511/67‑1 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:43703691/67‑1 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:38575033/67‑1 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:23958743/67‑1 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:27031450/67‑1 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:26586310/67‑1 (MQ=255) aGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgtgtg > 1:10006534/1‑68 (MQ=255) ttCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGc < 1:17060008/68‑1 (MQ=255) ttCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGc < 1:40238849/68‑1 (MQ=255) ttCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGc < 1:22099430/68‑1 (MQ=255) ttCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGc < 1:34934313/68‑1 (MQ=255) ttCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGc < 1:30466947/68‑1 (MQ=255) ttCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGc < 1:28618412/68‑1 (MQ=255) tcctccGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGcc > 1:36707878/1‑68 (MQ=255) tcctccGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGcc < 1:33049765/68‑1 (MQ=255) | CATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGACGAAGCC > CP009273/1483887‑1484020 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |