| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1483947 | NA (NA) | 3 (0.010) | 3/94 | NT | NA | noncoding (8/22 nt) | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 1483953 | NA (NA) | noncoding (14/22 nt) | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 841 total aligned reads displayed.
TGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTG > CP009273/1483880‑1484012 | cTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGttt > 1:39032893/1‑68 (MQ=255) ttGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGttt < 1:2341838/67‑1 (MQ=255) tGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGttttt > 1:17733324/1‑68 (MQ=255) aTGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTc > 1:4447822‑M2/1‑66 (MQ=255) tGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcct > 1:41187270‑M2/1‑65 (MQ=255) tGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcc < 1:27630778‑M2/67‑3 (MQ=255) aaTATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcctcc < 1:36470788‑M2/68‑6 (MQ=255) aaTATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcctcc < 1:10867982‑M2/68‑6 (MQ=255) atatCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcctccg > 1:44101334‑M2/1‑62 (MQ=255) atatCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcctcc < 1:46252308‑M2/67‑6 (MQ=255) tatCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcctccgc > 1:12081098‑M2/1‑61 (MQ=255) tatCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcctccgc > 1:3568561‑M2/1‑61 (MQ=255) tatCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcctccg < 1:14776278‑M2/67‑7 (MQ=255) atCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcctccg < 1:1301459‑M2/66‑7 (MQ=255) cTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcctccg < 1:25107610‑M2/64‑7 (MQ=255) tGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:50802259/1‑68 (MQ=255) tGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:28354527/1‑68 (MQ=255) gCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:3103229/1‑67 (MQ=255) gCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:2024113/1‑67 (MQ=255) gCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:10349262/1‑67 (MQ=255) gCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:9172889/1‑67 (MQ=255) gCAGACCCAGGTGGTTTATATACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:13983199/1‑67 (MQ=255) cccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg > 1:29026649/1‑67 (MQ=255) cccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGACAGTGcgcg > 1:31262702/1‑67 (MQ=255) cccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCACCGCCTGTGCGCGt > 1:11226619/1‑68 (MQ=255) ggtggtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCaga > 1:5124553/1‑68 (MQ=255) ggtggtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCaga > 1:33963432/1‑68 (MQ=255) gtggtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCagag > 1:43329113/1‑68 (MQ=255) tggtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGt > 1:25902626/1‑68 (MQ=255) ggtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGtt > 1:12524953/1‑68 (MQ=255) tttatttaCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCACCTGTGCGCGTCAGAGTTTa > 1:11605516/1‑68 (MQ=255) ttatttaCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTa > 1:32630794/1‑67 (MQ=255) tatttaCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGc > 1:7282892/1‑68 (MQ=255) ttaCAGTCTTAATGAGTGAAAGAGGCGGAGGaaaaaacctccgcctctttcactcattaagactgtaa < 1:23921583‑M1/68‑38 (MQ=255) taCAGTCTTAATGAGTGAAAGCGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAt > 1:40104686/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAt > 1:45428262/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAt > 1:31513300/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAt > 1:20520219/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAt > 1:16138415/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGAGAAt > 1:48152786/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCAGCCTGTGCGCGTCAGAGTTTAGCGatt > 1:19110536/1‑66 (MQ=255) aCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAtt < 1:42990376/68‑1 (MQ=255) gTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAtttt > 1:34246786/1‑67 (MQ=255) gTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAtttt > 1:8617835/1‑67 (MQ=255) cTTAATGCGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAtttt < 1:15614663/65‑1 (MQ=255) cTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCg > 1:16538034/1‑68 (MQ=255) aaTGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAgg > 1:2727737/1‑68 (MQ=255) aTGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAggg < 1:44616667/68‑1 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt < 1:18103937/68‑1 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:43608362/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:6061554/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:47634547/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:15177428/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:6480098/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:968296/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:25428594/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:24603693/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:12807978/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:29821015/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:30500033/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:23126662/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt < 1:22566922/68‑1 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTATGAGTTTTGCGAATTTTTCGATGGt > 1:38092860/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTCTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:34635110/1‑68 (MQ=255) aGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGc > 1:49174578/1‑68 (MQ=255) aGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGc > 1:26722258/1‑68 (MQ=255) aGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGc > 1:527279/1‑68 (MQ=255) ctGAAAGAGGCGGAGGTGTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCg < 1:18561960/67‑1 (MQ=255) gAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCg < 1:50227747/66‑1 (MQ=255) gAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCg < 1:45654602/66‑1 (MQ=255) gAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGaa < 1:37355666/68‑1 (MQ=255) gAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGaa < 1:4681275/68‑1 (MQ=255) gAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGaa < 1:14349169/68‑1 (MQ=255) gAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGGGCg < 1:27882120/66‑1 (MQ=255) aaaGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGaa < 1:47327869/67‑1 (MQ=255) aaGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATa < 1:20960446/68‑1 (MQ=255) agagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:40667743/1‑68 (MQ=255) agagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa < 1:4866178/68‑1 (MQ=255) agagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:7759547/1‑68 (MQ=255) agagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:19570668/1‑68 (MQ=255) gagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:41575872/1‑67 (MQ=255) gagGCGGAGGTTTTTAACTCAGAAGGTGCGCCACAGATTTTTGCGAATTTTTCGCGGGGGCtaataa > 1:23984356/1‑67 (MQ=255) agGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:28097706/1‑66 (MQ=255) ggCGGAGGTTTTTTCCTCCGCCTGTGCGCTTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGc < 1:22051505/67‑1 (MQ=255) ggCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGc < 1:19917850/67‑1 (MQ=255) ggCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGc < 1:8363971/67‑1 (MQ=255) ggCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGc < 1:21578325/67‑1 (MQ=255) cGGAGGgaaaaacctccgcctctttcactcattaagactgtaaataaaccacctgggtctgcagatat > 1:49935875‑M1/1‑6 (MQ=255) cGGAGGaaaaaacctccgcctctttcactcattaagactgtaaataaaccacctgggtctgcagata < 1:42072214‑M1/67‑62 (MQ=255) cGGAGGaaaaaacctccgcctctttcactcattaagactgtaaataaaccacctgggtctgcagata < 1:35394905‑M1/67‑62 (MQ=255) cGGAGGaaaaaacctccgcctctttcactcattaagactgtaaataaaccacctgggtctgcagata < 1:32026589‑M1/67‑62 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:38449437/67‑1 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:7018427/67‑1 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:33275661/67‑1 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:28518156/67‑1 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:27031450/67‑1 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGGCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:17291649/67‑1 (MQ=255) ggAGGTGTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:42405126/67‑1 (MQ=255) aGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgtgtg > 1:10006534/1‑68 (MQ=255) ggTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTCTCGAGGGTGCGAATAAGCtgtgtg < 1:49611252/67‑1 (MQ=255) | TGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTG > CP009273/1483880‑1484012 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |