| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1641311 = | 598 (0.970) | 36 (0.070) | 17/90 | NT | 7.7% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 386 (0.780) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
Only 100 of 175 total aligned reads displayed.
TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1641385‑1641311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagaaacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > CP009273/1641377‑1641440 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:34436929/1‑68TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:3167971/1‑68TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:28252623/1‑68TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:23824997/1‑68TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:2002623/1‑68TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:12940360/1‑68TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:17613145/1‑68TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:14834991/1‑68TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:50248934/1‑68TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:48362114/1‑68TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:15650104/1‑68 tccTAAGTCTAGTTTCTGTTGTTCATTTTCGGGGGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA < 1:22988494/65‑1 TCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA > 1:38701041/1‑68 TCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA > 1:28217236/1‑68 TCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA > 1:16874961/1‑68 TCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA < 1:31297328/68‑1 TCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA > 1:35127967/1‑68 TCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA < 1:32292810/68‑1 TCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA < 1:18362001/68‑1 TCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA > 1:43002478/1‑68 TCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA < 1:12850727/68‑1 CTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAA < 1:48076509/68‑1 CTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAA > 1:41043664/1‑68 AAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACG < 1:30164702/68‑1 AAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACG < 1:27493978/68‑1 AGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC < 1:45430739/68‑1 AGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC < 1:30616027/68‑1 AGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC < 1:29431003/68‑1 AGTCGCGTTTCTGGTGTTCATTTGCGGGTGGTTTGTTACGTGTTTTACCGGGGATATGCCAGAAACGC < 1:25186293/68‑1 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:47717869/68‑1 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:37527110/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:38831785/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:27168773/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:37513773/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:18497240/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:49812084/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:48972620/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:49531595/1‑67 TCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:27878852/1‑66 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:8112984/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:10140717/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:35534196/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:15508994/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:25868466/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:42553261/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:44678006/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:24641076/1‑65 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:31811078/1‑65 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:33260972/1‑65 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:1971501/1‑65 CGCGTTTCTGGAGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:18103096/66‑1 CGCGTTGCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:8029870/66‑1 CGCGTATCTGGTGTTCATTTTAGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:37843607/66‑1 CGCGGTTCTGGTGTTCATTTTCGGGTGGTGTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:5654882/66‑1 GCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGAC < 1:32512675/67‑1 CTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAA < 1:17322973/68‑1 GTTCATTTTCGGGCGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTAC < 1:12116385/68‑1 GTTCATTTACGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTAC < 1:10204112/68‑1 TCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACC < 1:3663015/67‑1 TTTTCGGGTGTTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:44946774/68‑1 TTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:11475822/68‑1 TTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:44321206/68‑1 TTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:49175165/68‑1 TTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGAAAAGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:38378543/68‑1 TTCGGGTGGTTTGTTACTTGTTTTCCCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTATGA < 1:15281252/68‑1 TTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTATGA < 1:15340694/68‑1 TTCGGGGGGTGTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTATGA < 1:41758921/68‑1 TGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTATGAATGGA < 1:35138532/67‑1 TGGTTTGTTACTTGTTTTACCGGGCATATGCCAGAAACGCGACTTAAGAATCTACCCTATGAATGGA < 1:26822282/67‑1 TACTTGTTTTACCGGGGATATGCCACAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTC < 1:38985199/68‑1 ACTTGTTTACCCGGGCATACCCCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCA < 1:22282583/68‑1 aACCGGGGATATCCCACAACCGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATC < 1:3363426/67‑1 CCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCA < 1:16587820/68‑1 CCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACACAACCCAAACGATCTTGGTTTCA > 1:21430864/1‑68 AGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAA > 1:48620660/1‑67 AAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAA > 1:8402236/1‑44 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:29768109/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:20059078/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:6050758/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:46971341/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:50252683/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCT < 1:34308734/67‑1 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCT < 1:24530805/67‑1 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCT < 1:40001469/67‑1 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCT < 1:33280282/67‑1 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATAGATCTTGGTTTCAATCTT > 1:15937747/1‑68 ACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTT < 1:140888/68‑1 ACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTT < 1:921771/68‑1 ACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTT < 1:187685/68‑1 ACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTT < 1:3679790/68‑1 CGCGACTTAAGAATCTACGCTATGAATTGATATCCACACAACCGAATCGATCTTGGTTTAAATCTTTT > 1:33928106/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGCATCCATCTTGGTTTCAATCTTTT > 1:46772121/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:49156218/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:46772102/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:14996074/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:22469471/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:23385017/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:30768163/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:12493451/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:34064311/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1641385‑1641311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagaaacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > CP009273/1641377‑1641440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |