| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1641311 = | 598 (0.970) | 36 (0.070) | 17/90 | NT | 7.7% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 386 (0.780) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
Only 100 of 759 total aligned reads displayed.
TTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAC > CP009273/1641244‑1641378 | ttAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAgc > 1:7406224/1‑68 (MQ=255)ttAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAgc > 1:4763574/1‑68 (MQ=255) aaaagattgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtcgcg > 1:39931698‑M1/65‑68 (MQ=255) aaaagattgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtcgcg > 1:49805089‑M1/65‑68 (MQ=255) aaaagattgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtcgcg > 1:23385017‑M1/65‑68 (MQ=255) aaaagattgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtcgcg > 1:30768163‑M1/65‑68 (MQ=255) ggACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGtt < 1:45352925/68‑1 (MQ=255) ggACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGtt < 1:48345986/68‑1 (MQ=255) ggACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGtt < 1:22499419/68‑1 (MQ=255) aagattgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtCGCGtt > 1:46971341‑M1/63‑68 (MQ=255) agattgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtCGCGtt < 1:24530805‑M1/6‑1 (MQ=255) tgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtCGCGTTTCTgg < 1:32443860‑M1/11‑1 (MQ=255) tAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGc < 1:23128417/68‑1 (MQ=255) tAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGc < 1:41560236/68‑1 (MQ=255) gCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCat > 1:28541437/1‑68 (MQ=255) gCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCat > 1:7219902/1‑68 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCatat < 1:50820696/68‑1 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCatat < 1:1013239/68‑1 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:9049358/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:282606/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:348536/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:25079800/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:35730699/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:8481021/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:22389422/1‑67 (MQ=255) ggCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGCCTGACTCAGCGCGTTTCTGGCATATcc > 1:49234635/1‑67 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGGATATcccc > 1:47900309/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:47156382/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:5649021/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:33269210/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:13541864/1‑68 (MQ=255) atcgattcggttgagtgcatatccattcatagggtagattcttaagtCGCGGTTCTGGGATATGCCCg < 1:29617129‑M1/21‑1 (MQ=255) tATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCg < 1:5167857/67‑1 (MQ=255) aTTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGt < 1:21410002/68‑1 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCCGCGCGTTTCTGGCATATCCCCGGTaaa > 1:38268504/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:40225629/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:41011846/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:42988660/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:35439141/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:18845535/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:4478734/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaa > 1:3199454/1‑67 (MQ=255) aCCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:19578545/1‑67 (MQ=255) ccATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAAc > 1:1190844/1‑68 (MQ=255) ccATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAAc < 1:12052361/68‑1 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:42463194/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:1251356/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:27056687/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:32860055/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:17214797/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:13068664/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:6291344/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:16448223/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:15054470/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:8150033/1‑68 (MQ=255) aaCGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGt < 1:27574292/68‑1 (MQ=255) aCGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTa < 1:35179826/68‑1 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:29287211/1‑68 (MQ=255) cTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACa < 1:37086958/67‑1 (MQ=255) aTTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAacc > 1:30246039/1‑68 (MQ=255) tACGCGCACCGCCCAGACTGCCTCAGCCCGTTTCTGGCATATCCCCGGTTAAACAAGTAACAAcccc > 1:46305412/1‑66 (MQ=255) tACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAacca > 1:19351914/1‑67 (MQ=255) tACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAacca > 1:12825457/1‑67 (MQ=255) aCGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAaccacc < 1:36386472/68‑1 (MQ=255) aCGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAaccacc < 1:37735181/68‑1 (MQ=255) gcgcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCg > 1:5026006/1‑68 (MQ=255) gcgcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCg > 1:20232903/1‑68 (MQ=255) gcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaa < 1:13821014/68‑1 (MQ=255) cACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaaa > 1:25830271/1‑68 (MQ=255) atagggtagattcttaagtCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaaaa < 1:44321206‑M1/49‑1 (MQ=255) atagggtagattcttaagtCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaaaa < 1:11475822‑M1/49‑1 (MQ=255) aCCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaaaa > 1:14773500/1‑68 (MQ=255) gggtagattcttaagtCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGa < 1:16843077‑M1/52‑1 (MQ=255) ggtagattcttaagtCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGa < 1:3663015‑M1/52‑1 (MQ=255) cAGATTGACTCAGCGCGTTTCTGGTATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAaca < 1:17427888/68‑1 (MQ=255) cAGACTGACTCAGCGCGTTTCTTGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAaca < 1:24086137/68‑1 (MQ=255) gactgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACAcc > 1:26674810/1‑68 (MQ=255) gactgactCAGCGCGTTTCTGGCATATACCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACAcc > 1:7966181/1‑68 (MQ=255) actgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCa > 1:48905282/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAATATGAACTCCAg > 1:31375022/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:10431540/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:11006569/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:41821787/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:39536517/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:15923271/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:34291662/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:45969738/1‑68 (MQ=255) tgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGa > 1:18667590/1‑68 (MQ=255) gactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGaa < 1:9311282/68‑1 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:31632259/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:19914690/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:21844144/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:39149427/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:45014103/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATCACCACCAGAAAc > 1:43902186/1‑67 (MQ=255) tCAGCGCGTTTCT‑GCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAcgc > 1:21100910/1‑68 (MQ=255) gtCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAcgcg < 1:38686360‑M1/66‑1 (MQ=255) gtCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAcgc < 1:3382325‑M1/65‑1 (MQ=255) CGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACTCCAGAAAcgcg < 1:18103096‑M1/66‑1 (MQ=255) CGCGTTTCTGGCATATCACCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAcgcg < 1:15214071‑M1/66‑1 (MQ=255) | TTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAC > CP009273/1641244‑1641378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |