| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1641311 = | 598 (0.970) | 36 (0.070) | 17/90 | NT | 7.7% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 386 (0.780) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
Only 100 of 560 total aligned reads displayed.
CGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > CP009273/1641311‑1641440 | GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAc > 1:37527110‑M1/1‑67 (MQ=255) GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAc > 1:48972620‑M1/1‑67 (MQ=255) GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACt > 1:30917266‑M1/1‑68 (MQ=255) ttctggggttcattttcgggtggtttgttacttgttttaccggggatatgccagaaacgcgACTTAAg < 1:7702720‑M2/7‑1 (MQ=255) TTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAg > 1:41043664‑M1/1‑68 (MQ=255) TCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGa < 1:18362001‑M1/68‑1 (MQ=255) TCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGa > 1:35127999‑M1/1‑68 (MQ=255) TCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGa > 1:43002478‑M1/1‑68 (MQ=255) TCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGa < 1:12850727‑M1/68‑1 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:14834991‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:23824997‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:33546888‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:17974297‑M1/1‑68 (MQ=255) GGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa < 1:21030108‑M1/66‑1 (MQ=255) GCATATCCCCGGTAAAACAAGTAACAAACCACCCTAAAATGAACACCAGAAACGCGACTTaagaaact < 1:45754852‑M1/68‑4 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:27163013/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:19459600/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:24342862/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:31279040/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:9105216/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:32936389/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:38553486/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:39925496/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:5159500/1‑67 (MQ=255) gttcattttcgggcggtttgttacttgttttaccggggatatgccagaaacgcgACTTAAGAATCTAc < 1:12116385‑M2/14‑1 (MQ=255) atatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAc < 1:23434405/68‑1 (MQ=255) tatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc < 1:28519671/68‑1 (MQ=255) tatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc < 1:50553353/68‑1 (MQ=255) tatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc < 1:9587648/68‑1 (MQ=255) tCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCt < 1:10182120/68‑1 (MQ=255) tCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCt < 1:16891986/68‑1 (MQ=255) ccccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTa < 1:5942089/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:39226705/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:10685929/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:6364624/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:13961248/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:42623479/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:38817951/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:27883111/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:256467/68‑1 (MQ=255) ttcggggggtgtgttacttgttttaccggggatatgccagaaacgcgACTTAAGAATCTACCCTATGa < 1:41758921‑M2/21‑1 (MQ=255) cGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGa < 1:2035158/68‑1 (MQ=255) cGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGa < 1:32183587/68‑1 (MQ=255) cGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGa < 1:4347715/68‑1 (MQ=255) gTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGAGACTTAAGAATCTACCCTATGAAt > 1:28874049/1‑68 (MQ=255) tAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAAt < 1:28189516/67‑1 (MQ=255) aaaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATg < 1:21779162/67‑1 (MQ=255) aaaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATg < 1:31591891/67‑1 (MQ=255) aaaCAAGTAACAAACCACCCTAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:29718400/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:32621857/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:26276314/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:47558076/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:3400718/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:5698089/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:7029920/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:7361967/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:11234328/68‑1 (MQ=255) aCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGata > 1:26630134/1‑68 (MQ=255) aCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGata < 1:40158564/68‑1 (MQ=255) aCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGata > 1:21960703/1‑68 (MQ=255) aCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGata < 1:27529471/68‑1 (MQ=255) aCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGata > 1:18974485/1‑68 (MQ=255) aaGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGatat > 1:12434239/1‑67 (MQ=255) aaGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGatat > 1:49298020/1‑67 (MQ=255) aGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc < 1:46127545/68‑1 (MQ=255) aGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc < 1:23109731/68‑1 (MQ=255) gTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc > 1:11742635/1‑67 (MQ=255) aaCAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCAc < 1:50294581/67‑1 (MQ=255) tacttgttttaccggggatatgccacaaacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTc < 1:38985199‑M2/35‑1 (MQ=255) aCAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTc > 1:16078281/1‑68 (MQ=255) cAAACCACCCGAAAATGAACACCAGAAACGCGACTTACGAATCTACCCTATGAATGGATATGCACTCa < 1:49775108/68‑1 (MQ=255) cAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCa < 1:30160420/68‑1 (MQ=255) cAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCa < 1:47106108/68‑1 (MQ=255) cAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCa < 1:15393563/68‑1 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATGTGCACTCAAcc > 1:44208941/1‑68 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:11591318/1‑68 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:48192420/1‑68 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:45399924/1‑68 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:14208196/1‑68 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:37795029/1‑68 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:49823373/1‑68 (MQ=255) ccaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCg > 1:38239093/1‑68 (MQ=255) ccaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCg > 1:17418527/1‑68 (MQ=255) ccacaCGAAAATGAACACAAGAAACGCGACTTAAGAATCTACCCTATGAAAGGATATCAACTCAACCg > 1:37231158/1‑68 (MQ=255) gAAAATGAACACCAGTAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGa < 1:47865476/68‑1 (MQ=255) gAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGa < 1:44856866/68‑1 (MQ=255) aaaTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGAt < 1:22714657/67‑1 (MQ=255) aaaTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGAt < 1:15654547/67‑1 (MQ=255) aTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCtt > 1:13041532/1‑68 (MQ=255) acacCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGtt < 1:22304167/68‑1 (MQ=255) acCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTc > 1:8205452/1‑68 (MQ=255) ccagaaacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCa < 1:16587820‑M2/57‑1 (MQ=255) agaaacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCaa > 1:48620660‑M2/10‑67 (MQ=255) aacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtt > 1:30654753‑M2/7‑68 (MQ=255) acgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCttt < 1:36680034‑M2/63‑1 (MQ=255) acgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCttt < 1:921771‑M2/63‑1 (MQ=255) cgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtttt > 1:34409038‑M2/5‑68 (MQ=255) cgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtttt > 1:46772102‑M2/5‑68 (MQ=255) cgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtttt > 1:2500471‑M2/5‑68 (MQ=255) cgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtttt > 1:35672182‑M2/5‑68 (MQ=255) | CGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > CP009273/1641311‑1641440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |