| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3471236 | 340 (0.550) | 21 (0.040) | 7/86 | NT | 6.6% | intergenic (+19/+30) | slyX/slyD | phi X174 lysis protein/FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase) |
| ? | CP009273 | = 3471237 | 330 (0.690) | intergenic (+20/+29) | slyX/slyD | phi X174 lysis protein/FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase) | |||||
Only 100 of 577 total aligned reads displayed.
TCGAACATCGCGTCGCAGGCTGAAGAAACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGCAACCGCAACCGCCGTTGCCTTTACCGCCAC > CP009273/3471170‑3471303 | tgtggcggtaaaggcaacggcggttgcggttgccactaataccgaaaaagtgacAAAAAAGCGGGGa > 1:42429771‑M1/55‑67 (MQ=255) cGAACATCGCGTCGCAGGCTGAAGAAACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGAt > 1:30033630/1‑67 (MQ=255) aaCATCGCGTCGCAGGCTGAAGAAACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATtc < 1:15919133‑M2/67‑3 (MQ=255) aCATCGCGTCGCAGGCTGAAGAAACGCCACCGCCACATTATTGAGGGGTAAAAAAAGCGGGGATtcc < 1:36886186‑M2/67‑4 (MQ=255) aCATCGCGTCGCAGGCTGAAGAAACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATtcc < 1:41257449‑M2/67‑4 (MQ=255) aCATCGCGTCGCAGGCTGAAGAAACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATtcc < 1:20570172‑M2/67‑4 (MQ=255) aCATCGCGTCGCAGGCTGAAGAAACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATtcc < 1:14836290‑M2/67‑4 (MQ=255) aTCGCGTCGCAGGCTGAAGAAACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATtcccc < 1:41613691‑M2/67‑6 (MQ=255) aTCGCGTCGCAGGCAGAAGAAACGCCACCGCCACAATATTGAGGCGTAAAAAAAGCGGGGATtcccc < 1:3058516‑M2/67‑6 (MQ=255) gCAGGCTGAAGAAACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTg > 1:39927290/1‑68 (MQ=255) aGGCTGAAGAAACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTc > 1:46325959/1‑68 (MQ=255) ggCTGAAGAAACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGtg > 1:36396820/1‑66 (MQ=255) cTGAAGAAACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACt > 1:32134780/1‑68 (MQ=255) cTGAAGAAACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACt > 1:26883510/1‑68 (MQ=255) tGAAGAAACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATtccccgctttttttacgcc > 1:14546677‑M2/1‑48 (MQ=255) tGAAGAAACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATtccccgctttttttacgcc > 1:21056596‑M2/1‑48 (MQ=255) tGAAGAAACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACt < 1:27600524/67‑1 (MQ=255) aagaaACGCCACCGCCACATAATTGAGGCGTAAAAAAAGCGGGGATtccccgctttttttacgcctca > 1:31660363‑M2/1‑46 (MQ=255) agaaACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACtttt < 1:36666799/67‑1 (MQ=255) gaaACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTc > 1:29085017/1‑68 (MQ=255) gaaACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTc > 1:28683857/1‑68 (MQ=255) gaaACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTc > 1:19115166/1‑68 (MQ=255) gaaACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTc > 1:12376680/1‑68 (MQ=255) gaaACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTc > 1:41464767/1‑68 (MQ=255) gaaACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTc > 1:23082249/1‑68 (MQ=255) aCGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGt < 1:50809687/68‑1 (MQ=255) aCGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGt < 1:15734037/68‑1 (MQ=255) cgccaccgccacATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCGCCTTTTTTGTCACTTTTTCGGt > 1:20876796/1‑68 (MQ=255) cgccaccgccacATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTa > 1:512235/1‑68 (MQ=255) cgccaccgccacATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTa > 1:34583075/1‑68 (MQ=255) gccaccgccagATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTAt < 1:4873812/68‑1 (MQ=255) gccaccgccacATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTAt < 1:20435789/68‑1 (MQ=255) accgccacATTATTGAGGCGTAAAAAACGCGGGGATtccccgctttttttacgcctcaataatgtggc > 1:11929141‑M2/1‑36 (MQ=255) accgccacATTATTGAGGCGTAAAAAAAGCGGGGATtccccgctttttttacgcctcaataatgtggc > 1:33979415‑M2/1‑36 (MQ=255) accgccacATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAg < 1:45443475/68‑1 (MQ=255) cgccacATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTg < 1:24681613/68‑1 (MQ=255) gccacATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTg > 1:30224537/1‑67 (MQ=255) ctaataccgaaaaagtgacAAAAAAGCGGGGCTTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTg < 1:10606562‑M1/48‑1 (MQ=255) ctaataccgaaaaagtgacAAAAAAGCGGGGATTCCCCG‑CGTTTTTGTCACTTTTTCGGTATTAGTg < 1:31403534‑M1/48‑1 (MQ=255) cacaTTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgca > 1:8994128/1‑68 (MQ=255) caTTATTGCGCCGTAAAAAAAGCGGGGATtccccgcttttttaacgcctcaataatgtggcggtggcg > 1:43570480‑M2/1‑29 (MQ=255) caTTATTGAGGCGTAAAAAAAGCGGGGATtccccgctttttttacgcctcaataatgtggcggtggcg > 1:7509921‑M2/1‑29 (MQ=255) caTTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgcaa > 1:25868458/1‑67 (MQ=255) ttattGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgcaaccg < 1:13369898/68‑1 (MQ=255) attGCGGCGTAAAAAACCCGGGCATcccccgctttttttacgcctcaataatgtggcggtggcgtttc > 1:37052430‑M2/1‑25 (MQ=255) attGAGGCGTAAAAAAAGCGGGGAatccccgctttttttacgcctcaataatgtggcggtggcgtt > 1:37577548‑M1/1‑24 (MQ=255) attGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgcaaccgca < 1:48603693/68‑1 (MQ=255) attGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgcaaccgca > 1:24011693/1‑68 (MQ=255) attGAGGCGTAAAAAAACCGGGGATtccccgctttttttacgcctcaataatgtggcggtggcgtttc > 1:37929016‑M2/1‑25 (MQ=255) attGAGCCGAAAAAAAAGCGGGGATtccccgctttttttacgccgcaataatgtggcggtggcgtttc > 1:5959262‑M2/1‑25 (MQ=255) tGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgcaaccgcaa > 1:40854086/1‑67 (MQ=255) tGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgcaaccgcaa > 1:29810188/1‑67 (MQ=255) tGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgcaaccgcaa > 1:26467104/1‑67 (MQ=255) tGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgcaaccgcaa > 1:6857431/1‑67 (MQ=255) tGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgcaaccgcaa > 1:45083734/1‑67 (MQ=255) tGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgcaaccgcaa > 1:50057595/1‑67 (MQ=255) gAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgcaaccgcaccc > 1:10187744/1‑68 (MQ=255) gAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgcaaccgcaacc > 1:1003581/1‑68 (MQ=255) gAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgcaaccgcaacc > 1:7361902/1‑68 (MQ=255) gAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgcaaccgcaacc > 1:18148426/1‑68 (MQ=255) gAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgcaaccgcaacc > 1:3938157/1‑68 (MQ=255) gAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgcaaccgcaacc > 1:40575325/1‑68 (MQ=255) gAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGgcaaccgcaacc < 1:2263358/68‑1 (MQ=255) ggCGTAAAAAAAGCGGGGAatccccgctttttttacgcctcaataatgtggcggtggcgtttcttca > 1:4706942‑M1/1‑19 (MQ=255) ggCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGcaaccgcaaccg > 1:19766665/1‑67 (MQ=255) ggCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGcaaccgcaaccg > 1:942569/1‑67 (MQ=255) ggCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGcaaccgcaaccg > 1:8421674/1‑67 (MQ=255) ggCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGcaaccgcaaccg > 1:16543675/1‑67 (MQ=255) ggCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGcaaccgcaaccg > 1:47216173/1‑67 (MQ=255) ggCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGcaaccgcaaccg > 1:35512213/1‑67 (MQ=255) ggCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGcaaccgcaaccg > 1:20005194/1‑67 (MQ=255) ggCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGcaaccgcaaccg > 1:44159156/1‑67 (MQ=255) ggCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGcaaccgcaaccg > 1:20176416/1‑67 (MQ=255) ggCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGcaaccgcaaccg > 1:23587655/1‑67 (MQ=255) ggCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGcaaccgcaaccg > 1:36052503/1‑67 (MQ=255) ggCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGcaaccgcaaccg > 1:32735132/1‑67 (MQ=255) agtgacAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGcaaccgcaaccg < 1:38332093‑M1/61‑1 (MQ=255) cGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGCAACCGCAAccgccg > 1:14236073/1‑68 (MQ=255) cGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGCAACCGCAAccgccg > 1:173793/1‑68 (MQ=255) gTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGCAACCGCAACCGCCGt < 1:48218093/68‑1 (MQ=255) AAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGCAACCGCAACCGCCGTTGc > 1:33620174‑M1/1‑68 (MQ=255) AAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGCAACCGCAACCGCCGTTGc > 1:49678603‑M1/1‑68 (MQ=255) AAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGCAACCGCAACCGCCGTTGc > 1:28496529‑M1/1‑68 (MQ=255) AAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGCACCCGCACCCGCCGTTg < 1:21777212‑M1/66‑1 (MQ=255) AAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGCAACCGCAACCGCCATTg < 1:11235811‑M1/66‑1 (MQ=255) AAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGCAACCGCAACCGCCGTTGCCt > 1:33177779‑M1/1‑68 (MQ=255) AAAAGCGGGGATTCCCCC‑CTTTTTTGTCACTTTTTCGCTATTAGTGGCAACCGCAACCGCCGTTGCCt > 1:47646208‑M1/1‑68 (MQ=255) aaGCGGGGAatccccgctttttttacgcctcaataatgtggcggtggcgtttcttcagcctgcgacgc > 1:31051456‑M1/1‑9 (MQ=255) aGCGGGGAatccccgctttttttacgcctcaataatgtggcggtggcgtttcttcagcctgcgacgcg > 1:35866243‑M1/1‑8 (MQ=255) ggggAatccccgctttttttacgcctcaataatgtggcggtggcgtttcttcagcctgcgacgcgat < 1:35237213‑M1/67‑63 (MQ=255) ggggAatccccgctttttttacgcctcaataatgtggcggtggcgtttcttcagcctgcgacgcgat < 1:2527496‑M1/67‑63 (MQ=255) GGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGCAACCGCAACCGCCGTTGCCTTTACCg > 1:15379851‑M1/1‑68 (MQ=255) ggAatccccgctttttttacgcctcaataatgtggcggtggcgtttcttcagcctgcgacgcgatgt < 1:46583386‑M1/67‑65 (MQ=255) ggAatccccgctttttttacgcctcaataatgtggcggtggcgtttcttcagcctgcgacgcgatgt < 1:15558005‑M1/67‑65 (MQ=255) ggAatccccgctttgtttacgcctcaataatgtggcgggggcggttcttcagcctgcgacgcgatgt < 1:46702188‑M1/67‑65 (MQ=255) gAatccccgctttttttacgcctcaataatgtggcggtggcgtttcttcagcctgcgacgcgatgtt < 1:49213320‑M1/67‑66 (MQ=255) gAatccccgctttttttacgcctcaataatgtggcggtggcgtttcttcagcctgcgacgcgatgtt < 1:25461480‑M1/67‑66 (MQ=255) gAatccccgctttttttacgcctcaataatgtggcggtggcgtttcttcagcctgcgacgcgaggtt < 1:27924427‑M1/67‑66 (MQ=255) GATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGCAACCGCAACCGCCGTTGCCTTTACCGcc > 1:1761519‑M1/1‑67 (MQ=255) GATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGCAACCGCAACCGCCGTTGCCTTTACCGcc > 1:18705456‑M1/1‑67 (MQ=255) | TCGAACATCGCGTCGCAGGCTGAAGAAACGCCACCGCCACATTATTGAGGCGTAAAAAAAGCGGGGATTCCCCG‑CTTTTTTGTCACTTTTTCGGTATTAGTGGCAACCGCAACCGCCGTTGCCTTTACCGCCAC > CP009273/3471170‑3471303 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |