| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 253 | 549 (0.890) | 29 (0.060) | 12/92 | NT | 5.2% | coding (64/66 nt) | thrL | thr operon leader peptide |
| ? | CP009273 | = 278 | 597 (1.170) | intergenic (+23/‑59) | thrL/thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 | |||||
Only 100 of 1280 total aligned reads displayed.
ATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGG > CP009273/186‑320 | tCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCT > 1:13439990‑M1/1‑67 (MQ=255) tCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCT > 1:17687054‑M1/1‑67 (MQ=255) ccATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGa < 1:1159822/68‑1 (MQ=255) cGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACa > 1:42724336/1‑68 (MQ=255) gCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAg < 1:33842732/68‑1 (MQ=255) accaccATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAacac < 1:37835020/67‑1 (MQ=255) accaccATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAAcaca > 1:23216054/1‑68 (MQ=255) accaccATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAAcaca > 1:30130793/1‑68 (MQ=255) accaccATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAAcaca > 1:46695359/1‑68 (MQ=255) accaccATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAAcaca > 1:42269466/1‑68 (MQ=255) accaccATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAAcaca > 1:40684459/1‑68 (MQ=255) accaTTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGaa > 1:23439133/1‑68 (MQ=255) accaTTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGaa < 1:45494004/68‑1 (MQ=255) ccaTTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGaaa > 1:16660791/1‑68 (MQ=255) ccaTTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGaaa > 1:37498436/1‑68 (MQ=255) caTTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGaaaa > 1:6562626/1‑68 (MQ=255) aTTACCACCACCATCACCATTACCACAGGTAAAGGGGCGTGCAGACGCATACATGAAACACAGaaaaa > 1:8462616/1‑68 (MQ=255) tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag > 1:50184472‑M2/1‑66 (MQ=255) ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcc > 1:41093573‑M2/1‑64 (MQ=255) ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcc > 1:20453720‑M2/1‑64 (MQ=255) ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc < 1:18520598‑M2/67‑4 (MQ=255) ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc < 1:7482000‑M2/67‑4 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGGGGttttctgtgtttgctgtacgcgtcagccc > 1:45819952‑M1/1‑39 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:40161669‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:15036407‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:34632916‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:25229460‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAAAGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:9753140‑M2/68‑6 (MQ=255) ccaccaTCACCATTACCCCAGGTAACGGTGCGGGCTGACGCGTACAGGAACCACAGAAAAAagcccgc < 1:43443227‑M2/68‑8 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:12827926‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:7986788‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:14456757‑M2/1‑61 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGTAAACACAGAAAAAagcccgcac > 1:50889817‑M2/1‑59 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac < 1:30686968‑M2/68‑10 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca < 1:25736172‑M2/67‑9 (MQ=255) ccatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcacc > 1:35109921‑M2/1‑58 (MQ=255) ccatcaccatTACCACAGGTAACGGTCCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcc < 1:35807016‑M2/66‑9 (MQ=255) caccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCCCCTg > 1:8775470/1‑66 (MQ=255) caccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGAc > 1:26915335/1‑68 (MQ=255) accatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACa > 1:47071834/1‑68 (MQ=255) ccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAg > 1:28934591/1‑68 (MQ=255) ccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAg > 1:49056070/1‑68 (MQ=255) catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt > 1:50527139/1‑68 (MQ=255) catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt > 1:3700751/1‑68 (MQ=255) ccACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:27651235/1‑67 (MQ=255) cacaGGTAACGGTGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggta > 1:48588738‑M1/1‑20 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:18239345/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:15749025/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:46032237/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:38880320/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:17306764/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGc < 1:46385676/68‑1 (MQ=255) aGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttt > 1:5724764/1‑68 (MQ=255) aCGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttttt > 1:21939152/1‑68 (MQ=255) aCGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttttt > 1:36429624/1‑68 (MQ=255) aCGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttttt > 1:11926251/1‑68 (MQ=255) cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttttt > 1:42008682/1‑67 (MQ=255) cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttttatc > 1:38498875/1‑65 (MQ=255) cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGAGGGCtttttttt > 1:33230007/1‑67 (MQ=255) ggTGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatgg > 1:41860060‑M1/1‑10 (MQ=255) ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTc > 1:19791306/1‑68 (MQ=255) ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTc > 1:19336507/1‑68 (MQ=255) ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTc > 1:20722508/1‑68 (MQ=255) ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTc > 1:10739771/1‑68 (MQ=255) ggTGCGGGCTGACGCGTAAAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTc > 1:47613701/1‑68 (MQ=255) gTGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggt > 1:29256419‑M1/1‑9 (MQ=255) gTGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggt > 1:24467237‑M1/1‑9 (MQ=255) gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg > 1:49407241/1‑68 (MQ=255) gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg > 1:16025847/1‑68 (MQ=255) gTGAGGGCTGACGCGTACAGGAAAAACAGAAAAAAGCCCGCACCTGACACTGCGTGCtttttttttat > 1:35590521/1‑66 (MQ=255) tGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggt < 1:1532548‑M1/67‑60 (MQ=255) gCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtgg > 1:31936675‑M1/1‑7 (MQ=255) gCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtgg > 1:2398134‑M1/1‑7 (MQ=255) gCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtgg > 1:26575928‑M1/1‑7 (MQ=255) gCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtgg > 1:49859093‑M1/1‑7 (MQ=255) gCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtgg > 1:1894457‑M1/1‑7 (MQ=255) gCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtgg > 1:10113287‑M1/1‑7 (MQ=255) gCGGGCTtttttctgtgtttactgtacgcgtcagcccgcaccgttacatgtggtaatggtgatggtgg > 1:32633018‑M1/1‑7 (MQ=255) gCGGGCTGCCGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGa > 1:39608081/1‑67 (MQ=255) gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGa > 1:9133395/1‑67 (MQ=255) gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGAc < 1:28163941/68‑1 (MQ=255) gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGAc < 1:44651044/68‑1 (MQ=255) gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGAc < 1:32134474/68‑1 (MQ=255) cGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGAc < 1:39271366/67‑1 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:12362712‑M1/68‑64 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:7120379‑M1/68‑64 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:11392603‑M1/68‑64 (MQ=255) ggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:21330753‑M1/67‑64 (MQ=255) gCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtgg < 1:48220931‑M1/67‑65 (MQ=255) gCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtgg < 1:25391978‑M1/67‑65 (MQ=255) gCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtgg < 1:21773164‑M1/67‑65 (MQ=255) gCTGACGCGTACAGGAAACACAGACAAAagcccgcaccgttacctgtggtaatggtgatggtggtgg > 1:29580561‑M2/1‑28 (MQ=255) gCTGACGCGTACAGGAAACACAGAAAAAcgcccgcaccgttacctgtggtaatggtgatggtggtgg > 1:44159638‑M2/1‑28 (MQ=255) cTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtggta > 1:5179104‑M1/1‑2 (MQ=255) cTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtggta > 1:6221425‑M1/1‑2 (MQ=255) cTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtggta > 1:13986208‑M1/1‑2 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttt > 1:2227208/1‑54 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCCGCCAAAg > 1:3140795/1‑68 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTCGACCAAAg < 1:43936753/67‑1 (MQ=255) tGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg < 1:45146745/67‑1 (MQ=255) | ATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGG > CP009273/186‑320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |