New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 253549 (0.890)29 (0.060) 12/92 NT 5.2% coding (64/66 nt) thrL thr operon leader peptide
?CP009273 = 278 597 (1.170)intergenic (+23/‑59) thrL/thrA thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1

Only 100 of 961 total aligned reads displayed.

ATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTGT  >  CP009273/211‑346
                                                                   |                                                                     
   accaccaccATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc                                                                    >  1:46283302‑M2/1‑65 (MQ=255)
    ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcc                                                                   >  1:23865311‑M2/1‑64 (MQ=255)
    ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc                                                                    <  1:44340153‑M2/67‑4 (MQ=255)
     caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                  <  1:35738218‑M2/68‑6 (MQ=255)
     caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                  <  1:1851143‑M2/68‑6 (MQ=255)
     caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                  <  1:25229460‑M2/68‑6 (MQ=255)
     caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                  <  1:6792259‑M2/68‑6 (MQ=255)
     caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                  <  1:43191966‑M2/68‑6 (MQ=255)
     caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                  <  1:29610183‑M2/68‑6 (MQ=255)
     caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                  <  1:39181150‑M2/68‑6 (MQ=255)
     caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                  <  1:35466204‑M2/68‑6 (MQ=255)
     caccaccaTCACCATTACCACAGGTAAAGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                  <  1:9753140‑M2/68‑6 (MQ=255)
       ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                                >  1:31936675‑M2/1‑61 (MQ=255)
       ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                                >  1:26583746‑M2/1‑61 (MQ=255)
       ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                                >  1:46671338‑M2/1‑61 (MQ=255)
       ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                                >  1:2210248‑M2/1‑61 (MQ=255)
       ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                                >  1:21223878‑M2/1‑61 (MQ=255)
       ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                                >  1:10113287‑M2/1‑61 (MQ=255)
       ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                                >  1:20590382‑M2/1‑61 (MQ=255)
       ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                                >  1:8682681‑M2/1‑61 (MQ=255)
         accatcaccatTACCACAGGTAACGGTGCGGGCTGAGGCGTACAGGAAACACAGAAAAAagcccgca                                                               <  1:50265517‑M2/67‑9 (MQ=255)
         accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac                                                              >  1:50599182‑M2/1‑59 (MQ=255)
         accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac                                                              >  1:24467237‑M2/1‑59 (MQ=255)
         accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca                                                               <  1:39591302‑M2/67‑9 (MQ=255)
         accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca                                                               <  1:13752341‑M2/67‑9 (MQ=255)
           catcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca                                                               <  1:47853183‑M2/65‑9 (MQ=255)
           catcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca                                                               <  1:47313297‑M2/65‑9 (MQ=255)
             tcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTg                                                           >  1:17684651/1‑67 (MQ=255)
              caccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGAc                                                         >  1:36626548/1‑68 (MQ=255)
               accatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACa                                                        <  1:5978415/68‑1 (MQ=255)
                ccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAg                                                       >  1:43591188/1‑68 (MQ=255)
                ccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAg                                                       >  1:41860059/1‑68 (MQ=255)
                 catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacct                                                      >  1:31633348‑M2/1‑51 (MQ=255)
                 catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt                                                      >  1:19128847/1‑68 (MQ=255)
                 catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt                                                      <  1:5252934/68‑1 (MQ=255)
                  atTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt                                                      >  1:16535024/1‑67 (MQ=255)
                  atTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTg                                                     <  1:29236737/68‑1 (MQ=255)
                     aCCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                  >  1:18736266/1‑68 (MQ=255)
                     aCCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                  >  1:2839526/1‑68 (MQ=255)
                       cacaGGTAACGGTGCGGGCTGCCGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGc                                                >  1:14734298/1‑68 (MQ=255)
                       cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTTACAGTGCgg                                                  >  1:47037026/1‑66 (MQ=255)
                       cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                  >  1:15630071/1‑66 (MQ=255)
                       cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                  >  1:37184792/1‑66 (MQ=255)
                       cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                  >  1:37652215/1‑66 (MQ=255)
                       cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                  >  1:12609622/1‑66 (MQ=255)
                       cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                  >  1:23390029/1‑66 (MQ=255)
                       cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                  >  1:30366188/1‑66 (MQ=255)
                       cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                  >  1:13037931/1‑66 (MQ=255)
                          aGGTAACGGTGCGGGCTGAGGCGTTCAGGAAACACAGAAAAAAGCCCGCTCCTGACAGTGCGGGC‑ttt                                            <  1:25381518/68‑1 (MQ=255)
                          aGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑ttt                                            >  1:32358940/1‑68 (MQ=255)
                          aGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑ttt                                            >  1:5724764/1‑68 (MQ=255)
                          aGGTAACGGTGCGGGCTGACGCGTACAGGAAAAACAGAAAAAAGCCACCACCTGAGAGTGCGCGC‑tat                                            >  1:8275900/1‑66 (MQ=255)
                           ggTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttt                                           >  1:10698535/1‑68 (MQ=255)
                             tAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttttt                                         >  1:48902506/1‑68 (MQ=255)
                             tAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttttt                                         >  1:27927742/1‑68 (MQ=255)
                             tAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tt                                             <  1:27146848/64‑1 (MQ=255)
                                cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttttttt                                       >  1:42008682/1‑67 (MQ=255)
                                cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttttttt                                       >  1:45142543/1‑67 (MQ=255)
                                cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGGGCGGGC‑tttttttt                                       >  1:32682104/1‑67 (MQ=255)
                                 ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTc                                     >  1:38074018/1‑68 (MQ=255)
                                  gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCg                                    >  1:49346595/1‑68 (MQ=255)
                                  gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCg                                    >  1:41142957/1‑68 (MQ=255)
                                    gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGa                                   <  1:4554735/67‑1 (MQ=255)
                                    gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGa                                   >  1:11329310/1‑67 (MQ=255)
                                    gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGAc                                  <  1:49744810/68‑1 (MQ=255)
                                    gCGGGCTGACGCGTACAGGAAACACACAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGAc                                  <  1:33214168/68‑1 (MQ=255)
                                       ggCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCaa                               >  1:28934044/1‑68 (MQ=255)
                                         cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACCGTGCGGGC‑TTTTTTTTTCGACCAAAg                             >  1:16014644/1‑68 (MQ=255)
                                         cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttt                                           >  1:2227208/1‑54 (MQ=255)
                                         cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCaaa                              <  1:25747791/67‑1 (MQ=255)
                                         cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCCAAg                             >  1:51061546/1‑68 (MQ=255)
                                         cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAg                             >  1:17190367/1‑68 (MQ=255)
                                         cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAg                             >  1:9034464/1‑68 (MQ=255)
                                         cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑‑TTTTTTTTCGACCAAAg                             <  1:43936753/67‑1 (MQ=255)
                                          tGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAgg                            <  1:21668880/68‑1 (MQ=255)
                                           gACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTTCGACCAAAgg                            <  1:38709176/68‑1 (MQ=255)
                                                gTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGa                      <  1:3083738/68‑1 (MQ=255)
                                                  aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg                    >  1:45812347/1‑68 (MQ=255)
                                                  aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:40585243/68‑1 (MQ=255)
                                                  aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:20019168/68‑1 (MQ=255)
                                                  aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:33672727/68‑1 (MQ=255)
                                                  aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:11446340/68‑1 (MQ=255)
                                                  aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:1952894/68‑1 (MQ=255)
                                                  aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:1196679/68‑1 (MQ=255)
                                                  aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:7886035/68‑1 (MQ=255)
                                                  aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAg                     <  1:48342934/67‑1 (MQ=255)
                                                       aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGt                   <  1:6310257/64‑1 (MQ=255)
                                                       aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaaca               >  1:15276900/1‑68 (MQ=255)
                                                       aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaaca               >  1:42421886/1‑68 (MQ=255)
                                                       aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaaca               >  1:40117944/1‑68 (MQ=255)
                                                       aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaaca               >  1:44718789/1‑68 (MQ=255)
                                                       aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaac                <  1:34458070/67‑1 (MQ=255)
                                                        aaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaacaa              <  1:7422425/68‑1 (MQ=255)
                                                        aaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaaca               <  1:36236826/67‑1 (MQ=255)
                                                          cacaGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAAcc            <  1:34949287/68‑1 (MQ=255)
                                                          cacaGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAAcc            >  1:50056486/1‑68 (MQ=255)
                                                                 aaaaGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAg     >  1:22847577/1‑68 (MQ=255)
                                                                  aaaGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAgt    >  1:42270273/1‑68 (MQ=255)
                                                                   aaGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAgtg   >  1:14158224/1‑68 (MQ=255)
                                                                   aaGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAgtg   <  1:18093703/68‑1 (MQ=255)
                                                                   |                                                                     
ATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTGT  >  CP009273/211‑346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.