| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4328027 = | 362 (0.580) | 21 (0.040) | 9/96 | NT | 5.0% | intergenic (‑281/+44) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase |
| ? | CP009273 | 4328055 = | 487 (0.920) | intergenic (‑309/+16) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase | |||||
Only 100 of 564 total aligned reads displayed.
TGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTG > CP009273/4327962‑4328094 | tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:20727491/68‑1 (MQ=255)tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:42900594/68‑1 (MQ=255)tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:12977517/68‑1 (MQ=255)tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:50756399/68‑1 (MQ=255)tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:31455821/68‑1 (MQ=255)gactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag > 1:35641585‑M1/66‑66 (MQ=255)gactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag > 1:42243266‑M1/66‑66 (MQ=255)gactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag > 1:14966319‑M1/66‑66 (MQ=255)gactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag > 1:7383503‑M1/66‑66 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:49128209‑M1/65‑67 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:25136095‑M1/65‑67 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:36346183‑M1/65‑67 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:9022089‑M1/65‑67 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:34711607‑M1/65‑67 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:46943479‑M1/65‑67 (MQ=255) cATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGt < 1:38308136/67‑1 (MQ=255) aTTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCGAGGCGGCGTaa > 1:49835781/1‑68 (MQ=255) aTTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTaa > 1:10693949/1‑68 (MQ=255) tttttGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAAt < 1:8537908/68‑1 (MQ=255) tttttGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAAt < 1:11161724/68‑1 (MQ=255) tttttGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAAt < 1:43561087/68‑1 (MQ=255) tgtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTa < 1:4450189/68‑1 (MQ=255) tgtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTa > 1:43197151/1‑68 (MQ=255) gcaATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACa > 1:34128772/1‑68 (MQ=255) ttATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACg > 1:26097353/1‑67 (MQ=255) ttATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGc < 1:31758423/68‑1 (MQ=255) aTGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCt < 1:45125773/68‑1 (MQ=255) tGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCt > 1:6992020/1‑67 (MQ=255) aaCGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGc < 1:481554/68‑1 (MQ=255) aaCGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGc < 1:5028274/68‑1 (MQ=255) gTTGCCATACTCATAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGa < 1:43729380/68‑1 (MQ=255) gTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTGAACAATTACGCCTTCAGCGGa < 1:5849330/68‑1 (MQ=255) gTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGa < 1:5370387/68‑1 (MQ=255) ccATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAg > 1:39326562/1‑68 (MQ=255) cATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGt > 1:39930521/1‑68 (MQ=255) cATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGt > 1:28183679/1‑68 (MQ=255) aCTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGt > 1:18099844/1‑68 (MQ=255) tCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGtt > 1:32229221/1‑67 (MQ=255) tCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGtt > 1:32608757/1‑67 (MQ=255) aaaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTAc > 1:6738174/1‑66 (MQ=255) aaaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTAc > 1:1013656/1‑66 (MQ=255) aaaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTAc > 1:20293441/1‑66 (MQ=255) aaaGGCCTAAGCCCAGGCGGCGTAAAGTTATATAAACAATAACGCCTACAGCGCAATAGTGGTTAc > 1:27532750/1‑66 (MQ=255) aaGGCCTCTGGCCTTGCGGCGTAATGTTATTTAAACTATTACGCCTTCAGCGGAATAGTGGTTACGCt < 1:34845056/68‑1 (MQ=255) aGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:35301017/1‑68 (MQ=255) aGGCCTAAGGCCAGGCGGCGTAATGTTATATAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:1211252/1‑68 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:26344818/1‑67 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:13714994/1‑67 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:19458593/1‑67 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTc > 1:14843462/1‑67 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTc > 1:44254052/1‑67 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTc > 1:29827549/1‑67 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTc > 1:406927/1‑67 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTc > 1:42484577/1‑67 (MQ=255) cTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCa < 1:6145537/67‑1 (MQ=255) cTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCa < 1:10571036/67‑1 (MQ=255) tAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACg < 1:25945581/68‑1 (MQ=255) aGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTTGTTACGCTTTCACGca < 1:11685681/68‑1 (MQ=255) aGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGca < 1:45999774/68‑1 (MQ=255) aGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGca < 1:9328323/68‑1 (MQ=255) aGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGca < 1:46278054/68‑1 (MQ=255) aGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGca < 1:29568866/68‑1 (MQ=255) aGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGca < 1:23230375/68‑1 (MQ=255) aGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGca < 1:8139104/68‑1 (MQ=255) ggCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcac > 1:26582145/1‑68 (MQ=255) ccgctgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcac < 1:49570045‑M1/60‑1 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCCCGcaca > 1:2396755/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:33129019/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:5229816/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:27150039/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:25467767/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:15903044/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:22615594/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:17671795/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:45871875/1‑68 (MQ=255) gctgaaGGCGTAATGTTATTTAAACGATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACAt < 1:47389614‑M1/62‑1 (MQ=255) gctgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACAt < 1:36893355‑M1/62‑1 (MQ=255) gctgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACAt < 1:24418576‑M1/62‑1 (MQ=255) ccAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACAt > 1:33878092/1‑68 (MQ=255) cAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACAt < 1:1917947/67‑1 (MQ=255) cAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATa < 1:47719976/68‑1 (MQ=255) gcggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:10348901/1‑68 (MQ=255) gcggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:12457008/1‑68 (MQ=255) gcggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:14069012/1‑68 (MQ=255) gcggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:37447849/1‑68 (MQ=255) gcggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:16993902/1‑68 (MQ=255) gcggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:27921121/1‑68 (MQ=255) gcggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:22292792/1‑68 (MQ=255) gcggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:21513488/1‑68 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAAc < 1:48453299/66‑1 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAAc < 1:31115504/66‑1 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAAc < 1:30382310/66‑1 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:41727582/1‑68 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:40156619/1‑68 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:45477487/1‑68 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:19719421‑M1/1‑67 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:28741572‑M1/1‑67 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:32352931‑M1/1‑67 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:16201876‑M1/1‑67 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:37870788‑M1/1‑67 (MQ=255) | TGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTG > CP009273/4327962‑4328094 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |