| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360070 = | 566 (0.910) | 1206 (2.600) +CTGATCAGTGAATT |
26/84 | NT | 74.1% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 558 (0.900) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
Only 100 of 2015 total aligned reads displayed.
CCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCC > CP009273/360003‑360136 | ccAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgat < 1:23645173/68‑1 (MQ=255)ccAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgat < 1:37757361/68‑1 (MQ=255)ccAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgat < 1:24528067/68‑1 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCgatga < 1:50493168/65‑1 (MQ=255) gCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATaa > 1:38633502/1‑67 (MQ=255) cTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTg < 1:28669753/68‑1 (MQ=255) cTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTg < 1:44296664/68‑1 (MQ=255) ttCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGt < 1:40522822/68‑1 (MQ=255) tCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTc < 1:7889069/68‑1 (MQ=255) gcctacccgtatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa > 1:50094051‑M1/55‑68 (MQ=255) gcctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa < 1:17007872‑M1/14‑1 (MQ=255) gcctacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCaa < 1:25207621‑M1/14‑1 (MQ=255) aCCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCaa < 1:31799165/68‑1 (MQ=255) tacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACa > 1:28124535‑M1/52‑68 (MQ=255) tacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACa > 1:2029887‑M1/52‑68 (MQ=255) tacccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACa > 1:49554565‑M1/52‑68 (MQ=255) tacccggataatatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACa > 1:30883785‑M1/52‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:21476337‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:45010464‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:965517‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:36094128‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:27125436‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:31399098‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:1621416‑M1/50‑68 (MQ=255) cccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATg > 1:8824956‑M1/50‑68 (MQ=255) ccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATga < 1:46094790‑M1/20‑1 (MQ=255) ccggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATga < 1:6206327‑M1/20‑1 (MQ=255) ggatattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATgaga > 1:27658359‑M1/47‑68 (MQ=255) ccAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATgaga > 1:3740912/1‑68 (MQ=255) cAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATgaga < 1:10007098/67‑1 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGaa > 1:39811824‑M1/45‑67 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGaa > 1:35593841‑M1/45‑67 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:2317035‑M1/24‑1 (MQ=255) atattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:2643191‑M1/24‑1 (MQ=255) aGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAAt > 1:42884498/1‑68 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAACCAAGAGAAt < 1:32193496‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt > 1:3395129‑M1/44‑67 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:18591378‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:39358120‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:32663621‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:5741095‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:11156722‑M1/24‑1 (MQ=255) tattatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAt < 1:64702‑M1/24‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:47583750‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:7363504‑M1/25‑1 (MQ=255) attatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAtt < 1:43810992‑M1/25‑1 (MQ=255) ttatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATTcc > 1:38275627‑M1/42‑68 (MQ=255) ggCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC < 1:35119434‑M1/68‑1 (MQ=255) ggCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC > 1:39047887‑M1/1‑68 (MQ=255) ggCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC < 1:19371771‑M1/68‑1 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCCAACATGAGAATtcca < 1:29534654‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:25714064‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:34430268‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:30538918‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:17848340‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:50843746‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:49118406‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:4471306‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:13108215‑M1/28‑2 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:41771232‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:40124207‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:43309816‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:41482238‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:33351856‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:24819204‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:14156877‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:2410682‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:2672343‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:34783835‑M1/29‑3 (MQ=255) aTCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCa > 1:18958672/1‑68 (MQ=255) gcgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAtt > 1:29248897/1‑66 (MQ=255) accaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCa > 1:10591452/1‑68 (MQ=255) ccaTCCAGTGCAGTAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAg < 1:47035281/68‑1 (MQ=255) ccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAg < 1:41126821/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:42497202/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:14639514/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:6827634/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt > 1:48365721/1‑68 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:13552365/68‑1 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGttt > 1:11658613/1‑68 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGttt > 1:1263467/1‑68 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGCTCCCCAATTCCTGGCAGTTTa > 1:22362382/1‑68 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTa > 1:5165506/1‑68 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATg > 1:20889857/1‑67 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:12194956/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg < 1:8493763/68‑1 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:19720963/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:15733967/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:26162906/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggc < 1:36546013/67‑1 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggc > 1:37117239/1‑68 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:22741203/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:30022447/1‑67 (MQ=255) tgcGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTTGCAGTTTATGGCGGGCGTCCt < 1:9167117/66‑1 (MQ=255) cagtgataagCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:15149944‑M1/4‑30 (MQ=255) agtgataaGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:45567854‑M1/3‑29 (MQ=255) agtgataaGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:21928816‑M1/3‑29 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:17457432‑M1/2‑28 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:18274831‑M1/2‑28 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:4661321‑M1/2‑28 (MQ=255) | CCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCC > CP009273/360003‑360136 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |