| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360070 = | 566 (0.910) | 1206 (2.600) +CTGATCAGTGAATT |
26/84 | NT | 74.1% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 558 (0.900) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
Only 100 of 1812 total aligned reads displayed.
GCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCA > CP009273/561498‑561630 | gcAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTc < 1:26717512/68‑1 (MQ=255) aaTGCAGTCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTccc < 1:44529403/68‑1 (MQ=255) aaTGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTTAGGATGCGTCATCGCCATTGCTccc < 1:2072918/68‑1 (MQ=255) aaTGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTccc < 1:11004132/68‑1 (MQ=255) cTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAAt < 1:33697300/65‑1 (MQ=255) cTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACa > 1:9597836/1‑68 (MQ=255) cTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACa > 1:43727375/1‑68 (MQ=255) cTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACa > 1:16358631/1‑68 (MQ=255) cTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACa > 1:23812875/1‑68 (MQ=255) tGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACaaa < 1:36234038/68‑1 (MQ=255) tGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACaaa < 1:32075455/68‑1 (MQ=255) cGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAAcc > 1:15153765/1‑68 (MQ=255) cGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAAcc > 1:29661832/1‑68 (MQ=255) gttgtGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAAt < 1:41286880/68‑1 (MQ=255) gttgtGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAAt < 1:39054830/68‑1 (MQ=255) ttgtGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAAtt > 1:34176483/1‑68 (MQ=255) gcctaccCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa < 1:1876857‑M2/65‑29 (MQ=255) gcctaccCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa < 1:4819649‑M2/65‑29 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:7972713/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:30246619/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:21998112/1‑68 (MQ=255) cctacCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa < 1:870764‑M2/65‑29 (MQ=255) cctacCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa < 1:17510095‑M2/65‑29 (MQ=255) ctaCCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaac > 1:27219268‑M2/2‑38 (MQ=255) tACCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaaca > 1:49554565‑M2/1‑37 (MQ=255) tACCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaaca > 1:23367642‑M2/1‑37 (MQ=255) tACCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaaca > 1:24668801‑M2/1‑37 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg < 1:25169388‑M2/68‑34 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:12242931‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg < 1:28740068‑M2/68‑34 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:16997521‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:46808138‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:584375‑M2/1‑35 (MQ=255) cGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTg > 1:6975802/1‑66 (MQ=255) ggATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgaga > 1:29292460‑M2/1‑32 (MQ=255) ggATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGcc > 1:25555482/1‑67 (MQ=255) gATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTc > 1:47584857/1‑68 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:3747526‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:45841434‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:45398274‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:42063207‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:6216885‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:6564676‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:39446362‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:13470343‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:1449620‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:22886998‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:21537684‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaa > 1:35750890‑M2/1‑30 (MQ=255) atatTATCGAGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaaa < 1:30717823‑M2/68‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:26399640‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:114945‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:48870088‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:22434491‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:50119719‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:8384024‑M2/67‑39 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattc > 1:42651262‑M2/1‑28 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaatt < 1:47240891‑M2/67‑40 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaatt < 1:4037650‑M2/67‑40 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaatt < 1:14003494‑M2/67‑40 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgataagtgataagctgtcaaacatgagaatt < 1:277704‑M2/67‑40 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGt > 1:25852561/1‑67 (MQ=255) attagCGTGAGGATGCGTCATCGCCATTaattcacggatcagtgataagctgtcaaacatgagaatt < 1:2423062‑M2/67‑40 (MQ=255) ttatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcc < 1:39834764‑M2/68‑42 (MQ=255) ttatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTcc < 1:10033568/68‑1 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:35336783‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:46220446‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:44068063‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:41627771‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:33236425‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:7361309‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:12669460‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:38543617‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:17848340‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:50966526‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:31245772‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataag < 1:5203924‑M2/46‑22 (MQ=255) atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAACACCAATTTCAGCCAGTGCCTCGTCCAt > 1:32587633/1‑68 (MQ=255) atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAt > 1:34645788/1‑68 (MQ=255) atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAAAACAAAACCAATTTCAGCCAGTGCCTCGTCCAt > 1:19152945/1‑68 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcacacatgagaattccat < 1:44879641‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:10479760‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:43191354‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:1575904‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:31575604‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:40118689‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:20190942‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactcatcagtgataagctgtcaaacatgagaattcgat < 1:35043574‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAACCCAAATTCAGCCAGTGACTCGTCCAtt > 1:37918238/1‑68 (MQ=255) tCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAtt < 1:49199432/68‑1 (MQ=255) tCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAtt > 1:50498758/1‑68 (MQ=255) tCGTGAGGATGCGTCATAGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:37133043‑M2/67‑44 (MQ=255) cGTGAGGATGCGTCATCGCCATTaattcacagatcagtgaaaagctgtcaaacatgagaattccatc < 1:21211395‑M2/67‑45 (MQ=255) aGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAtttttt > 1:11903988/1‑67 (MQ=255) aGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTc > 1:40846035/1‑68 (MQ=255) tCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCGATTTTTTCGATGAAc > 1:9188186/1‑67 (MQ=255) tCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAAc > 1:19689588/1‑67 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt < 1:18287216/67‑1 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt < 1:28173802/67‑1 (MQ=255) tGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCATCGTCCATTTTTTCGATGAACTCCGGCACCa > 1:36686780/1‑67 (MQ=255) | GCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCA > CP009273/561498‑561630 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |