| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 447701 = | 594 (0.960) | 25 (0.050) | 6/96 | NT | 5.1% | coding (1301/1476 nt) | ampG | muropeptide transporter |
| ? | CP009273 | 447798 = | 414 (0.780) | coding (1204/1476 nt) | ampG | muropeptide transporter | |||||
Only 100 of 728 total aligned reads displayed.
AAGTGCGTCAAATCCAGCGCGTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGGAGATAAAGTTGTCATT > CP009273/447635‑447768 | aaGTGCGTCAAATCCAGCGCGTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGAcgcccg > 1:42484873/1‑67 (MQ=255) ctggtcgacattctatctattctccgtcgccgctgccgtaccagggcttattttgctgctggtttgc > 1:7747577‑M1/66‑67 (MQ=255) aGTGCGTCAAATCCAGCGCGTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGAcgcccgcc > 1:10522318/1‑68 (MQ=255) aGTGCGTCAAATCCAGCGCGTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGAcgcccgcc > 1:34444671/1‑68 (MQ=255) aGTGCGTCAAATCCAGCGCGTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGAcgcccgcc > 1:35802051/1‑68 (MQ=255) aGTGCGTCAAATCCAGCGCGTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGAcgcccgcc > 1:13317385/1‑68 (MQ=255) aGTGCGTCAAATCCAGCGCGTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGAcgcccgcc > 1:5854313/1‑68 (MQ=255) aGTGCGTCAAATCCAGCGCGTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGAcgcccg < 1:45949813/66‑1 (MQ=255) aGTGCGTCAAATCCAGCGCGTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGAcgcccg < 1:12145098/66‑1 (MQ=255) gTCAAATCCAGCGCGTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAg < 1:27101342/68‑1 (MQ=255) gTCAAATCCAGCGCGTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAg < 1:41238060/68‑1 (MQ=255) cAAATCCAGCGCGTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAgt < 1:35416948/67‑1 (MQ=255) aaTCCAGCGCGTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTc < 1:20411505/68‑1 (MQ=255) aTCCAGCGCGTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTcc > 1:15498217/1‑68 (MQ=255) aTCCAGCGCGTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTcc > 1:9107353/1‑68 (MQ=255) ccAGCGCGTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCcac > 1:12335170/1‑68 (MQ=255) cgcgTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATg > 1:46891945/1‑67 (MQ=255) cgcgTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATg > 1:24996576/1‑67 (MQ=255) cgcgTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATg > 1:23400958/1‑67 (MQ=255) gcgTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATgg < 1:18304863/67‑1 (MQ=255) gcgTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATgg < 1:33014798/67‑1 (MQ=255) gcgTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATgg < 1:48215977/67‑1 (MQ=255) gcgTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATgg < 1:22878324/67‑1 (MQ=255) gcgTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATg < 1:33489113/66‑1 (MQ=255) gcgTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATg < 1:25801965/66‑1 (MQ=255) ccATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAg < 1:33825121/68‑1 (MQ=255) ccATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAg > 1:49077591/1‑68 (MQ=255) ccATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAg < 1:19400115/68‑1 (MQ=255) cATCGTCAATAGCAGTAACTACACGGCCAACAGGCTGACGCCCGCCGCCAGTGCCCACATGGCAAAgg < 1:49910365/68‑1 (MQ=255) cATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAgg < 1:3250170/68‑1 (MQ=255) cATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAgg < 1:46179756/68‑1 (MQ=255) cATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAgg < 1:2882447/68‑1 (MQ=255) cATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAgg < 1:36300844/68‑1 (MQ=255) cATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAgg < 1:17361565/68‑1 (MQ=255) cATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAg > 1:31338402/1‑67 (MQ=255) cGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCAt > 1:4337996/1‑68 (MQ=255) tCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATa > 1:23877992/1‑67 (MQ=255) aaTAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAAcc < 1:48475687/68‑1 (MQ=255) aaTAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAAcc < 1:47566097/68‑1 (MQ=255) aTAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATaa > 1:20070298/1‑65 (MQ=255) aGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGc < 1:31860887/68‑1 (MQ=255) gCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGcc > 1:18952162/1‑68 (MQ=255) gCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGcc > 1:19834353/1‑68 (MQ=255) gCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGcc > 1:38124058/1‑68 (MQ=255) gCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGcc > 1:6940875/1‑68 (MQ=255) gCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGcc > 1:44339141/1‑68 (MQ=255) gCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGcc > 1:1656542/1‑68 (MQ=255) aGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCgg > 1:30884974/1‑68 (MQ=255) aGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCgg > 1:45051995/1‑68 (MQ=255) aGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGGGTCCACATGGCAAAGGCATAACCTGCCgg > 1:32218390/1‑68 (MQ=255) aaCCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGata > 1:24155361/1‑68 (MQ=255) aaCCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGa < 1:22202950/66‑1 (MQ=255) aaCCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGa < 1:33209531/66‑1 (MQ=255) aaCCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGa < 1:30250111/66‑1 (MQ=255) aaCCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGa < 1:27946521/66‑1 (MQ=255) ccACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGatat > 1:14039563/1‑67 (MQ=255) ccACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGatat > 1:35040878/1‑67 (MQ=255) ccACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGatat > 1:1384226/1‑67 (MQ=255) ccACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGatat > 1:3882902/1‑67 (MQ=255) ccACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGatat > 1:4385894/1‑67 (MQ=255) cagggcttattttgctgctggtttGCCGCCAGGGTGCACATGGCAAAGGCAGACCCTGCCGGCTATGc < 1:47271114‑M1/44‑1 (MQ=255) cacaCGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGc > 1:6301299/1‑68 (MQ=255) cacaCGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGc > 1:804974/1‑68 (MQ=255) cacaCGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGc > 1:22587761/1‑68 (MQ=255) cacaCGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGc < 1:16898287/68‑1 (MQ=255) acacGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCg < 1:50496357/68‑1 (MQ=255) acacGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCg < 1:9781154/68‑1 (MQ=255) cacGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCgg > 1:8404978/1‑68 (MQ=255) cacGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCgg > 1:12850522/1‑68 (MQ=255) cacGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCgg > 1:37630958/1‑68 (MQ=255) cacGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCgg > 1:45403875/1‑68 (MQ=255) cacGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCgg > 1:11849447/1‑68 (MQ=255) ggcttattttgctgctggtttGCCGCCAGTGTCCACATGGCAAAGGCATAAGCGGCCGGTTAGGCGGt < 1:50903862‑M1/47‑1 (MQ=255) acGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGt < 1:40585547/68‑1 (MQ=255) acGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGt < 1:28376029/68‑1 (MQ=255) acGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGt < 1:26283759/68‑1 (MQ=255) acGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGt < 1:14387100/68‑1 (MQ=255) acGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGt < 1:2093095/68‑1 (MQ=255) gcttattttgctgctggtttGCCGCCCGTGTCCAGATGGCAAAGGGATAACCTGCCGGATATGCGGt < 1:21566873‑M1/47‑1 (MQ=255) gCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACg > 1:15087526/1‑68 (MQ=255) gCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACg > 1:36723389/1‑68 (MQ=255) cAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACggg < 1:39587407/68‑1 (MQ=255) aaCAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGga < 1:38423293/68‑1 (MQ=255) aaCAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGga < 1:6042815/68‑1 (MQ=255) aaCAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGga < 1:29505175/68‑1 (MQ=255) aaCAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGga < 1:4307936/68‑1 (MQ=255) aCAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGgag < 1:10250909/68‑1 (MQ=255) cAGGCTGCCGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGgaga > 1:11276801/1‑68 (MQ=255) ggCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGGAGATa > 1:34714760/1‑68 (MQ=255) ggCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGGAGATa > 1:17941004/1‑68 (MQ=255) ggCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGGAGATa > 1:7501752/1‑68 (MQ=255) ggCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGGAGATa > 1:4000165/1‑68 (MQ=255) gACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGGAGATAAAGt < 1:41890114/68‑1 (MQ=255) gACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGGAGATAAAGt < 1:37243917/68‑1 (MQ=255) gcccgccGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGGAGATAAAGTTg > 1:49515009/1‑67 (MQ=255) gcccgccGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGGAGATAAAGTTGt < 1:24324398/68‑1 (MQ=255) ccgccgCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGGAGATAAAGTTGTc < 1:5186450/67‑1 (MQ=255) ccgccgCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGGAGATAAAGTTGTc < 1:45642164/67‑1 (MQ=255) cgccgcCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGGAGATAAAGTTGTCAt < 1:26650799/68‑1 (MQ=255) cgccgcCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGGAGATAAAGTTGTCAt < 1:42795347/68‑1 (MQ=255) | AAGTGCGTCAAATCCAGCGCGTCCATCGTCAATAGCAGTAACCACACGGCCAACAGGCTGACGCCCGCCGCCAGTGTCCACATGGCAAAGGCATAACCTGCCGGATATGCGGTACGGGAGATAAAGTTGTCATT > CP009273/447635‑447768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |