| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2724774 = | NA (NA) | 3 (0.010) | 3/108 | NT | 100% | intergenic (‑258/+185) | rrsG/clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| ? | CP009273 | = 4028728 | 0 (0.000) | intergenic (+215/‑163) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon | |||||
Only 100 of 794 total aligned reads displayed.
CTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCC > CP009273/2724707‑2724837 | cccGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcg > 1:17474981/1‑68 (MQ=255) gCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggcg > 1:36798311/1‑68 (MQ=255) cgagTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtg < 1:18301050/67‑1 (MQ=255) agagTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtg > 1:44106545/1‑68 (MQ=255) gTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtgt < 1:42371070/66‑1 (MQ=255) gTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtg < 1:16261595/65‑1 (MQ=255) gTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgt < 1:47123786/64‑1 (MQ=255) gTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgt < 1:42934342/64‑1 (MQ=255) gTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGttt > 1:2313804/1‑68 (MQ=255) gTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGttt > 1:36215394/1‑68 (MQ=255) gTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGttt > 1:43288793/1‑68 (MQ=255) gTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGttt > 1:13846202/1‑68 (MQ=255) gTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGttt > 1:10422986/1‑68 (MQ=255) cAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGttt < 1:19715578/66‑1 (MQ=255) aaGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc < 1:1320341/68‑1 (MQ=255) aaGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc < 1:32164893/68‑1 (MQ=255) aaGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc < 1:39856703/68‑1 (MQ=255) aaGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc < 1:18825463/68‑1 (MQ=255) aTTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGCCCCGGCGGCGTGTTTGCCgttg > 1:29790917/1‑68 (MQ=255) aTTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttg > 1:10927442/1‑68 (MQ=255) aTTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgttg > 1:1565585/1‑68 (MQ=255) aTTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgt < 1:12883740/66‑1 (MQ=255) tttCTTTGCTTTTCTCTGTTGTGATTCTCAGGAGAACACCGCCGACCCGGCGGCGTGTTTGCCgttgt < 1:27958448/68‑1 (MQ=21) cTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTcc < 1:45010530/68‑1 (MQ=255) tttGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCg > 1:46706207/1‑68 (MQ=255) tGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCgtg < 1:777143/68‑1 (MQ=255) tGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCgtg < 1:32800265/68‑1 (MQ=255) tGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCgtg < 1:26177873/68‑1 (MQ=255) tGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCgtg < 1:33750500/68‑1 (MQ=255) ttttCTCTGTTGAGATTCTCAGGAGAACCCCGCCGCCCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCa > 1:38154199/1‑68 (MQ=255) ttttCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCa > 1:35008572/1‑68 (MQ=255) ttttCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCa > 1:7418109/1‑68 (MQ=255) ttttCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCa > 1:37274171/1‑68 (MQ=255) ttttCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCa < 1:46216717/68‑1 (MQ=255) ttttCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCa > 1:23596720/1‑68 (MQ=255) tctcTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAgtg < 1:35829021/68‑1 (MQ=255) tctcTGTTGAGAGTCTCAGGAGCACCCCGCCGACCCGGCGGCGGGTTTGCCGTTGTTCCGTGTCAgtg < 1:8138665/68‑1 (MQ=17) tctGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAgtggt > 1:9652253/1‑68 (MQ=255) tctGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAgtggt < 1:41873742/68‑1 (MQ=255) gTTGAGATTCTCAGTAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGgc < 1:1507322/68‑1 (MQ=255) gTTGAGATTCTCAGGAGAACCGCGGCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGgc < 1:48079564/68‑1 (MQ=255) gTTGAGATTCTCAGGAGAACCCCGCCGCCCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGgc > 1:34546250/1‑68 (MQ=255) gTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGgc > 1:37980246/1‑68 (MQ=255) gTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGgc < 1:9340224/68‑1 (MQ=255) tGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGgcgc < 1:14678641/68‑1 (MQ=255) tGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGgcgc < 1:45344406/68‑1 (MQ=255) tGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGgcgc > 1:11545374/1‑68 (MQ=255) tGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGgcgc > 1:50455920/1‑68 (MQ=255) tGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGgcgc < 1:8621577/68‑1 (MQ=255) tGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGgcgc < 1:35428422/68‑1 (MQ=255) tGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGgcgc < 1:40447113/68‑1 (MQ=255) tGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGgcgc < 1:10020626/68‑1 (MQ=255) tGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGGTGTTCCGTGTCAGTGGTGgcgc < 1:21540935/68‑1 (MQ=255) gagaTTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCa < 1:48964440/68‑1 (MQ=255) gaTTCTCAGGGGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCAt < 1:30755770/67‑1 (MQ=255) gaTTCTCAGGAGAACCCGGCCGACGCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCAt < 1:24383833/67‑1 (MQ=255) gaTTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCAtt > 1:22799919/1‑68 (MQ=39) gaTTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCAt < 1:10627324/67‑1 (MQ=39) gaTTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCAt < 1:47551556/67‑1 (MQ=39) gaTTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCAt < 1:44538943/67‑1 (MQ=39) gaTTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCAt < 1:5534667/67‑1 (MQ=39) gaTTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCAt < 1:407291/67‑1 (MQ=39) gaTTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCAt < 1:23962081/67‑1 (MQ=39) gaTTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCAt < 1:2548533/67‑1 (MQ=39) gaTTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCAt < 1:31668561/67‑1 (MQ=39) ttCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATtat > 1:19108619/1‑68 (MQ=35) ttCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATtat < 1:45774029/68‑1 (MQ=35) ttCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATtat > 1:50974359/1‑68 (MQ=35) ttCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATtat < 1:39306723/68‑1 (MQ=35) ttCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATtat < 1:6404487/68‑1 (MQ=35) ttCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATta < 1:31070122/67‑1 (MQ=35) ttCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATta < 1:29995313/67‑1 (MQ=35) ttCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGT‑GCGCATta < 1:6829740/66‑1 (MQ=255) ctcAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAg < 1:22047278/68‑1 (MQ=35) tcAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAgg < 1:30290748/68‑1 (MQ=35) cAGGAGAACCCCGCCGACCCGGCGGCGTG‑TTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGa < 1:37808566/68‑1 (MQ=255) aGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGGTGTTCCGTGTCAGTGGTGGCGCAATATAGGGa > 1:8917465/1‑68 (MQ=255) ggAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAg > 1:22345167/1‑68 (MQ=35) agaACCCCGCCGCCCCGGCGGCGTGTTTGCCGTTGTTCCGTGGCAGTGGTGGCGCATTATAGGGAGtt > 1:1534468/1‑68 (MQ=11) agaACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGa < 1:50034139/65‑1 (MQ=35) agaACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGa < 1:33292699/65‑1 (MQ=35) agaACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGa < 1:20203997/65‑1 (MQ=35) agaACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGa < 1:16848802/65‑1 (MQ=35) agaACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGa < 1:4370879/65‑1 (MQ=35) agaACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGtt > 1:5171655/1‑68 (MQ=35) agaACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGtt > 1:38609782/1‑68 (MQ=35) agaACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGtt > 1:41230587/1‑68 (MQ=35) agaACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGtt > 1:2062411/1‑68 (MQ=35) agaACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGtt > 1:12179676/1‑68 (MQ=35) agaACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGtt > 1:12666816/1‑68 (MQ=35) agaACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGtt > 1:49460325/1‑68 (MQ=35) aCCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTa < 1:24999315/66‑1 (MQ=35) aCCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTAt < 1:28339604/67‑1 (MQ=35) aCCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTAt > 1:48483451/1‑67 (MQ=35) cccGCCGCCCCGGCGGCGTGTTTGGCGTTGTTCCGGGTCAGTGGTGGCGCATTTTAGGGAGTTATTcc > 1:26715503/1‑68 (MQ=11) cgccgACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCgg < 1:28909951/68‑1 (MQ=35) cgccgACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCgg < 1:2727900/68‑1 (MQ=35) gccgACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCgg > 1:20951162/1‑67 (MQ=35) gccgACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCgg > 1:41631976/1‑67 (MQ=35) gccgACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCgg > 1:29487245/1‑67 (MQ=35) | CTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCC > CP009273/2724707‑2724837 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |