| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2724774 = | NA (NA) | 3 (0.010) | 3/108 | NT | 100% | intergenic (‑258/+185) | rrsG/clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| ? | CP009273 | = 4028728 | 0 (0.000) | intergenic (+215/‑163) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon | |||||
Only 100 of 131 total aligned reads displayed.
AGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATAC > CP009273/4028661‑4028794 | agagAAAGCAAAAATAAATGCTTGCCTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGA < 1:1398598‑M2/68‑1 (MQ=255)agagAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGTAGGCGTATTATGCACACCCCGCGCCGCTGA < 1:8983386‑M2/68‑1 (MQ=255)agagAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGA < 1:6779547‑M2/68‑1 (MQ=255)agagAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGA < 1:51278130‑M2/68‑1 (MQ=255)agagAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGA < 1:43509129‑M2/68‑1 (MQ=255)agagAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGA < 1:17054240‑M2/68‑1 (MQ=255)agagAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGA < 1:26656866‑M2/68‑1 (MQ=255)agagAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGA < 1:16201608‑M2/68‑1 (MQ=255)agagAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTAATATGCACACCCCGCGGCGCTGA < 1:22199131‑M2/68‑1 (MQ=255) gaAAGCAAAAATAAATGCTTGACTCTGTAGCGGGTAGGCGTATTATGCACACCCCGCGCCGCTGA > 1:10414617‑M2/1‑65 (MQ=255) gaAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGA > 1:1737467‑M2/1‑65 (MQ=255) gaAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGA > 1:9928105‑M2/1‑65 (MQ=255) gaAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGA > 1:19621352‑M2/1‑65 (MQ=255) gaAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGA > 1:19907544‑M2/1‑65 (MQ=255) gaAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGA > 1:22397773‑M2/1‑65 (MQ=255) gaAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGA > 1:36765189‑M2/1‑65 (MQ=255) gaAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGA > 1:36975752‑M2/1‑65 (MQ=255) gaAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGA > 1:39648111‑M2/1‑65 (MQ=255) gaAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGA > 1:425708‑M2/1‑65 (MQ=255) gaAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGA > 1:157422‑M2/1‑65 (MQ=255) gggAAAGCGTATTATGCACACCCCGCGCCGCTGAcccggcggcgtgtttgccgttgttccgtgtcagt < 1:43067639‑M2/68‑35 (MQ=255) cgcTTAcccggcggcgtgtttgccgttgttccgggtcagtggtggcgcattatagggagttattccgg > 1:35761532‑M2/1‑6 (MQ=255) cgcTGAcgcggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:46391272‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtttttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:32397549‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:11588548‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:11399389‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:5106191‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:5085844‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:12823172‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:39059347‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:3184186‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:46844638‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:50814576‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:33183498‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:50623180‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:3404911‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:34207127‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:47161109‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:47602653‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:47175576‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:1632947‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:44125837‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:17179063‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:43990986‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:21811837‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:45564234‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:27206963‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:11663816‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:23102588‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:46644499‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:26026475‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:40149697‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:15383626‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgtgtttgccgttgttccgtggcagtggtggcgcattatagggagttattccgg > 1:42175081‑M2/1‑6 (MQ=255) cgcTGAcccggcggcgggtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg > 1:5379592‑M2/1‑6 (MQ=255) gcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgctttatagggagttattccggc < 1:17175059‑M2/68‑64 (MQ=255) gcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagtttttccgg < 1:20620012‑M2/67‑63 (MQ=255) gcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggc > 1:17079952‑M2/1‑5 (MQ=255) gcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:37500447‑M2/67‑63 (MQ=255) gcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:45335764‑M2/67‑63 (MQ=255) gcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:12899131‑M2/67‑63 (MQ=255) gcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:49530005‑M2/67‑63 (MQ=255) gcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:33634764‑M2/67‑63 (MQ=255) gcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:31693382‑M2/67‑63 (MQ=255) gcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:30830578‑M2/67‑63 (MQ=255) gcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:9172925‑M2/67‑63 (MQ=255) gcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:9742206‑M2/67‑63 (MQ=255) gcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:23770565‑M2/67‑63 (MQ=255) gcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:23503853‑M2/67‑63 (MQ=255) gcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:22852873‑M2/67‑63 (MQ=255) gcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:22103526‑M2/67‑63 (MQ=255) gcTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:21005504‑M2/67‑63 (MQ=255) cTGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:26116237‑M2/66‑63 (MQ=255) tGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgctttatagggagttattccgg < 1:19350587‑M2/65‑63 (MQ=255) tGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcct > 1:31877284‑M2/1‑3 (MQ=255) tGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcc > 1:10360056‑M2/1‑3 (MQ=255) tGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcc > 1:43921487‑M2/1‑3 (MQ=255) tGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcc > 1:38686472‑M2/1‑3 (MQ=255) tGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcc > 1:1315905‑M2/1‑3 (MQ=255) tGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcc > 1:24857406‑M2/1‑3 (MQ=255) tGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:40373623‑M2/65‑63 (MQ=255) tGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:46717432‑M2/65‑63 (MQ=255) tGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:10574879‑M2/65‑63 (MQ=255) tGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:27632613‑M2/65‑63 (MQ=255) tGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:29538827‑M2/65‑63 (MQ=255) tGAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccgg < 1:33053726‑M2/65‑63 (MQ=255) gAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattttagggagttattccggcct < 1:45498621‑M2/67‑66 (MQ=255) gAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcttg > 1:29627315‑M2/1‑2 (MQ=255) gAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctg > 1:20005123‑M2/1‑2 (MQ=255) gAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctg > 1:2447417‑M2/1‑2 (MQ=255) gAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctg < 1:9094523‑M2/68‑67 (MQ=255) gAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctg < 1:2991894‑M2/68‑67 (MQ=255) gAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctg > 1:34022349‑M2/1‑2 (MQ=255) gAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctg > 1:49251316‑M2/1‑2 (MQ=255) gAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctg < 1:48143090‑M2/68‑67 (MQ=255) gAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctg < 1:37147717‑M2/68‑67 (MQ=255) gAcccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctg < 1:12107597‑M2/68‑67 (MQ=255) gAcccggcggcgtgtttgccgttgttccgtgtcaggggtggcgcattatagggagttattccggcctg < 1:34784021‑M2/68‑67 (MQ=255) acccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctg < 1:34756461‑M2/67‑67 (MQ=255) acccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcatt > 1:26876662‑M2/1‑1 (MQ=255) | AGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATAC > CP009273/4028661‑4028794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |