| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3832491 = | 541 (0.870) | 26 (0.050) | 7/96 | NT | 6.7% | coding (884/924 nt) | yicL | EamA family inner membrane putative transporter |
| ? | CP009273 | 3832524 = | 257 (0.480) | coding (917/924 nt) | yicL | EamA family inner membrane putative transporter | |||||
Only 100 of 543 total aligned reads displayed.
TCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACTTC > CP009273/3832457‑3832591 | tCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCa > 1:2752928/1‑68 (MQ=255) cATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCAt > 1:3496522/1‑68 (MQ=255) cATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCAt > 1:42597406/1‑68 (MQ=255) aTCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATa < 1:7607791/68‑1 (MQ=255) aTCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATa < 1:29438189/68‑1 (MQ=255) tCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATaa < 1:45134495/68‑1 (MQ=255) tCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATaa < 1:9170212/68‑1 (MQ=255) cGGTGATTTTGTTTTCTATGGATTCCCGTCGCCGGGCCAGAAAAATAAATCGTCCGGCGCGGCATAAg < 1:17232120/68‑1 (MQ=255) cGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAg < 1:19193858/68‑1 (MQ=255) gcggtgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAg < 1:25474612‑M2/5‑1 (MQ=255) gTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTg > 1:35640529/1‑68 (MQ=255) ggtgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTga < 1:44842510‑M2/8‑1 (MQ=255) ggtgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTga < 1:50442775‑M2/8‑1 (MQ=255) ggggccgggccggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTga < 1:18012760‑M2/8‑1 (MQ=255) gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag < 1:42853491/68‑1 (MQ=255) tgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTgag < 1:7183495‑M2/9‑1 (MQ=255) attttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgaga > 1:21460868/1‑68 (MQ=255) ttttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGaa < 1:22161581/68‑1 (MQ=255) tttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAt < 1:39376117/68‑1 (MQ=255) ttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAtt < 1:15807691/68‑1 (MQ=255) ttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAtt < 1:38544453/68‑1 (MQ=255) gctggtaattctcacttatGCCGCGCCAGAAAATTAAATCGTCCGGCGCGGCATAAGTGAGAATTAcc < 1:37317994‑M1/49‑1 (MQ=255) gctggtaattctcacttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAc < 1:31353799‑M1/48‑1 (MQ=255) atttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcc > 1:4390524/1‑68 (MQ=255) tttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcca > 1:2646944/1‑68 (MQ=255) tttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcca < 1:401283/68‑1 (MQ=255) tCAATTGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:3011301/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:28873889/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:29287231/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:3756792/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:25112772/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:24006587/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:39114860/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:41631271/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:15570024/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:46861147/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:4834917/68‑1 (MQ=255) ggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTGAGAATTAccagc < 1:1540659‑M2/19‑1 (MQ=255) ggtaattctcacttatgccccgccggacgatttatttttctggcgcggcATAAGTGAGAATTAccagc < 1:34576835‑M2/19‑1 (MQ=255) ggaaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTGAGAATTAccagc < 1:26870150‑M2/19‑1 (MQ=255) cgtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTGAGAATTAccagc < 1:33917026‑M2/19‑1 (MQ=255) gtaatgctcacttatgccgcgccggacgatttatttttctgccgcggcATAAGTGAGAATTAccagc < 1:5830770‑M2/19‑1 (MQ=255) aattctcacttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagccag < 1:2850972‑M1/55‑1 (MQ=255) aTGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagccag > 1:31717966/1‑68 (MQ=255) aTGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagccag > 1:14180660/1‑68 (MQ=255) ttctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTGAGAATTACCAGCCAGGc < 1:26104265‑M2/24‑1 (MQ=255) ctcacttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCa < 1:10194843‑M1/58‑1 (MQ=255) ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc < 1:18469741/68‑1 (MQ=255) ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc < 1:17657909/68‑1 (MQ=255) ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc > 1:5617134/1‑68 (MQ=255) ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc < 1:33419057/68‑1 (MQ=255) ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc < 1:6948911/68‑1 (MQ=255) ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc < 1:14518958/68‑1 (MQ=255) ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc < 1:2384912/68‑1 (MQ=255) ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc < 1:2272584/68‑1 (MQ=255) cccGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc > 1:30770209/1‑68 (MQ=255) cccGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc < 1:2041430/68‑1 (MQ=255) cccGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc > 1:36457712/1‑68 (MQ=255) cttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc < 1:21119721‑M1/62‑1 (MQ=255) cttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc < 1:23533105‑M1/62‑1 (MQ=255) cttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc < 1:19910971‑M1/62‑1 (MQ=255) cttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc < 1:43291555‑M1/62‑1 (MQ=255) cttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc < 1:6458196‑M1/62‑1 (MQ=255) ttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgcg < 1:4115262‑M1/63‑1 (MQ=255) cGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgcg > 1:9694500/1‑67 (MQ=255) cGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgcg > 1:27802517/1‑67 (MQ=255) gTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGcc < 1:18780918/68‑1 (MQ=255) cgccgcGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAc < 1:18423896/68‑1 (MQ=255) cgccgcGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAc < 1:9404841/68‑1 (MQ=255) GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc < 1:16451320‑M1/68‑1 (MQ=255) GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc > 1:8815792‑M1/1‑68 (MQ=255) CCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCCGGCACCGCGCCCCCg < 1:50085242‑M1/68‑1 (MQ=255) CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg > 1:40379718‑M1/1‑67 (MQ=255) CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg > 1:12647156‑M1/1‑67 (MQ=255) CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg > 1:32364160‑M1/1‑67 (MQ=255) CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt > 1:42199864‑M1/1‑68 (MQ=255) GCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGtt > 1:5353842‑M1/1‑68 (MQ=255) GCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTaa < 1:11477053‑M1/68‑1 (MQ=255) aaaaTAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATgg > 1:8385297/1‑68 (MQ=255) aataaatCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGtt < 1:9087700/68‑1 (MQ=255) taaatCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGtt > 1:45607373/1‑66 (MQ=255) atCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTg > 1:7801628/1‑67 (MQ=255) atCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTg > 1:10495906/1‑67 (MQ=255) atCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTg > 1:33839247/1‑67 (MQ=255) tCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGcc > 1:49524902/1‑68 (MQ=255) cGTCCGGCGCGGCATAAGTGTGAATTACCAGCGAGGCACCTCGCCACCGTTAAAATTGGTTTCTGCCg < 1:27094536/68‑1 (MQ=255) cGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGcc > 1:14852660/1‑67 (MQ=255) gTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAACTGGTTTCTGCCGc < 1:47815025/68‑1 (MQ=255) gTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGc < 1:46003001/68‑1 (MQ=255) gTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGc < 1:45225901/68‑1 (MQ=255) gTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGc < 1:7972013/68‑1 (MQ=255) ccGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCt < 1:44368029/67‑1 (MQ=255) cGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCttt < 1:19583585/68‑1 (MQ=255) gcggcATAAGTGAGAATTACCAGCCAGGCCCCGCGCCCCCGTTAAAAATGGTTTCTGCCGCTTTAGc > 1:12342847‑M2/6‑67 (MQ=255) gcggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCTCCGTTAAAAATGGTTTCTGCCGCTGTAGCg > 1:33164715‑M2/6‑68 (MQ=255) gcggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCg > 1:13238110‑M2/6‑68 (MQ=255) ggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGa < 1:2619901‑M2/64‑1 (MQ=255) ggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGa < 1:27278671‑M2/64‑1 (MQ=255) ggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGa < 1:42308824‑M2/64‑1 (MQ=255) cATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACt < 1:14011877‑M2/66‑1 (MQ=255) | TCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACTTC > CP009273/3832457‑3832591 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |