| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4061067 = | 600 (0.970) | 57 (0.110) | 16/94 | NT | 11.4% | coding (1570/2037 nt) | yihQ | alpha‑glucosidase |
| ? | CP009273 | 4061094 = | 381 (0.730) | coding (1543/2037 nt) | yihQ | alpha‑glucosidase | |||||
Only 100 of 953 total aligned reads displayed.
GGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCCAG > CP009273/4061028‑4061160 | gggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTc > 1:27458760/1‑68 (MQ=255)gggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTc > 1:49546880/1‑68 (MQ=255)gggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTc > 1:19179722/1‑68 (MQ=255) ggTGCGCATCATCGGCGTTAAGGCGCTGAAAACGAACCAGCGCACCAGCAGCTCTTTGCTGCGCTGCa > 1:10845643/1‑68 (MQ=255) ggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCa > 1:39292670/1‑68 (MQ=255) ggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCa > 1:7409615/1‑68 (MQ=255) tccgcATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:35957486/65‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCCGCTCTTTGCTGCGCTTct > 1:20485827/1‑65 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCa > 1:22427132/1‑66 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:10464279/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:4414095/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:15197303/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:13966767/67‑1 (MQ=255) gcgcATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAtc < 1:26944800/67‑1 (MQ=255) gacattggcggttacaccaccctgtttgagatgaagcgcagcaaagagctgctgctgcgctTCAt < 1:8535001‑M2/4‑1 (MQ=255) cattggcggttacaccaccctgtttgagatgaagcgcagcaaagagctgctgctgcgctTCATCTCaa < 1:16659652‑M2/9‑1 (MQ=255) cattggcggttacaccaccctgtttgagatgaagcgcagcaaagagctgctgctgcgctTCATCTCaa < 1:3053463‑M2/9‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCaa < 1:42459990/67‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCaa < 1:8281817/67‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCaa < 1:43522512/67‑1 (MQ=255) atcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAg > 1:41891931/1‑68 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:14540829/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:33468901/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:39717815/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:898715/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg > 1:46030319/1‑68 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:46599867/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:6301805/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCACAAACAgg < 1:17818914/68‑1 (MQ=255) ggcggttacaccacctgtttgagatgaagcccagcaaagagctgctgctgcgctTCATCTCAAACAgg < 1:694237‑M2/14‑1 (MQ=255) ggCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggt < 1:29144736/68‑1 (MQ=255) cGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtg < 1:16142982/67‑1 (MQ=255) cGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtg < 1:26415321/67‑1 (MQ=255) tacaccaccctgtttgagatgacgcgcagcaaagagctgctgctgcgctTCATCTCAAACAGggtggt < 1:6557488‑M2/19‑1 (MQ=255) gTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtggt < 1:8724136/68‑1 (MQ=255) gTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtggt < 1:11194599/68‑1 (MQ=255) gTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtgg < 1:43004377/67‑1 (MQ=255) gAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGgtgt < 1:21872160/68‑1 (MQ=255) accaccctgtttgagatgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTa < 1:23384970‑M1/49‑1 (MQ=255) ggCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTaa > 1:27796601/1‑67 (MQ=255) ggCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTaa > 1:35433750/1‑67 (MQ=255) ggCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTaa > 1:47544360/1‑67 (MQ=255) ggCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTaa > 1:5711876/1‑67 (MQ=255) ggCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTaa > 1:50757683/1‑67 (MQ=255) caccctgtttgagatgaAGCGCAGCAGCAGCTCTTTGCTGCGGTTCCTCTCAAACAGGGTGGTGTaa < 1:30155499‑M1/50‑1 (MQ=255) gcTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:1194971/67‑1 (MQ=255) gcTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:32890152/67‑1 (MQ=255) gcTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGc < 1:9653507/68‑1 (MQ=255) cctgtttgagatgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:45876333‑M1/53‑1 (MQ=255) cctgtttgagatgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:30823633‑M1/53‑1 (MQ=255) ttgagatgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATg < 1:12980349‑M1/59‑1 (MQ=255) atgaAGCGCAGCAGCAGCTCTTTGCTGCGGTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc < 1:24774599‑M1/61‑1 (MQ=255) atgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc < 1:10011161‑M1/61‑1 (MQ=255) atgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc < 1:31281612‑M1/61‑1 (MQ=255) aCCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCt < 1:48474694/67‑1 (MQ=255) aCCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCt < 1:19603168/67‑1 (MQ=255) ccAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCtgt > 1:21359685/1‑68 (MQ=255) ccAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCtgt > 1:44473029/1‑68 (MQ=255) ccAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCtgt > 1:26078087/1‑68 (MQ=255) ccAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCtgt < 1:40320359/68‑1 (MQ=255) ccAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCtgt < 1:18261835/68‑1 (MQ=255) cgcgccgaaaagagctgctgctgcgctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTgtgg < 1:37438300‑M2/41‑1 (MQ=255) gcagcagcaGCGCTTTGCGGCGCTTCATCTCAAACAGGCTGGTGTCACCGCCAATGGCGCtgttgt < 1:26742025/66‑1 (MQ=255) gcaccaaagcgctgctgctgcgctTCATCGCAAACAGGGTGGTGTAACCGCCAATGTCGCTgtggt < 1:38017841‑M2/42‑1 (MQ=255) GCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTgtggt > 1:41439989‑M1/1‑66 (MQ=255) GCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTgtggt > 1:9295584‑M1/1‑66 (MQ=255) GCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTgtggt > 1:38478541‑M1/1‑66 (MQ=255) GCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTgtggt > 1:4507637‑M1/1‑66 (MQ=255) GCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTgtggt > 1:34961916‑M1/1‑66 (MQ=255) GCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTgtgg > 1:13296820‑M1/1‑65 (MQ=255) GCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTgtgg > 1:34148526‑M1/1‑65 (MQ=255) GCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTgtgg > 1:25584053‑M1/1‑65 (MQ=255) GCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTgtgg > 1:34538657‑M1/1‑65 (MQ=255) GCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGc < 1:50058868‑M1/68‑1 (MQ=255) GCAGCAGCAGCTCTTTGCTGCGCGTCATCTCAAACAGGGTGGTGTAACCCCCAATGTCGCTGTGGTGc < 1:23962250‑M1/68‑1 (MQ=255) CAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAgg < 1:49228720‑M1/67‑1 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCGAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAgg > 1:46245103‑M1/1‑66 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGTTGGTGTAACCGCCAATGTCGCTGTGGTGCAgg > 1:23638480‑M1/1‑66 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAgg > 1:32492328‑M1/1‑66 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAgg > 1:22904839‑M1/1‑66 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAgg > 1:51216609‑M1/1‑66 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAgg > 1:12477687‑M1/1‑66 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAgg > 1:2524516‑M1/1‑66 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGcc < 1:47322684‑M1/68‑1 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGcc < 1:36457017‑M1/68‑1 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGcc < 1:31728541‑M1/68‑1 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGcc < 1:15887021‑M1/68‑1 (MQ=255) agcTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATg > 1:5372554/1‑68 (MQ=255) tctTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGt < 1:7906584/66‑1 (MQ=255) tctTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGt < 1:38875868/66‑1 (MQ=255) tctTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTcc > 1:18591900/1‑68 (MQ=255) ttGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGt < 1:4548093/68‑1 (MQ=255) gctgcgctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCa > 1:4065128‑M2/9‑68 (MQ=255) gctgcgctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTCGTGCAGGCCATGTCCGGTCa > 1:3720723‑M2/9‑68 (MQ=255) tgcgctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCAtt < 1:17222683‑M2/62‑1 (MQ=255) tgcgctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCAtt > 1:46845285‑M2/7‑68 (MQ=255) gctTCATCTCAAGCAGGGTGGTGTAACCGCCAATGTCGCTATGGTGCAGGCCATGTCCGGTCATTGcc > 1:48046479‑M2/4‑68 (MQ=255) gctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGcc > 1:29854931‑M2/4‑68 (MQ=255) gctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGc < 1:28347025‑M2/64‑1 (MQ=255) gctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGc < 1:13713507‑M2/64‑1 (MQ=255) | GGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCCAG > CP009273/4061028‑4061160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |