| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4468828 | NA (NA) | 10 (0.020) | 5/92 | NT | NA | intergenic (+122/+23) | rraB/yjgM | protein inhibitor of RNase E/putative acetyltransferase |
| ? | CP009273 | = 4468837 | NA (NA) | intergenic (+131/+14) | rraB/yjgM | protein inhibitor of RNase E/putative acetyltransferase | |||||
Only 100 of 740 total aligned reads displayed.
CATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCCAAG > CP009273/4468771‑4468904 | cATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAc < 1:31055004‑M2/68‑2 (MQ=255)cATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAc < 1:7037070‑M2/68‑2 (MQ=255)cATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAc < 1:1360484‑M2/68‑2 (MQ=255)cATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAc < 1:7540612‑M2/68‑2 (MQ=255)cATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAc < 1:5637197‑M2/68‑2 (MQ=255)cATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCACGAGTTGAACAc < 1:30448490‑M2/68‑2 (MQ=255) aTTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAc < 1:37132635‑M2/67‑2 (MQ=255) cATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgg < 1:1790474‑M2/68‑6 (MQ=255) aTGTCACATCCGGCATAAACAAAACGTCCGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgg < 1:35291672‑M2/67‑6 (MQ=255) aTGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgg < 1:19138368‑M2/67‑6 (MQ=255) aTGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgg < 1:26055908‑M2/67‑6 (MQ=255) aTGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgg < 1:37528083‑M2/67‑6 (MQ=255) cacaTCCGGCATAAACAAAACGTAGGTTGTTAATGTTCGAATGCCCGCGAGTATAACAcgcgggcagt < 1:26756950‑M2/68‑11 (MQ=255) cacaTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgggcatt > 1:46547667‑M2/1‑58 (MQ=255) cacaTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgggcatt < 1:50459167‑M2/68‑11 (MQ=255) cacaTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgggcatt > 1:45557851‑M2/1‑58 (MQ=255) cacaTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgggcatt < 1:1172616‑M2/68‑11 (MQ=255) cacaTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgggcatt < 1:39031441‑M2/68‑11 (MQ=255) cacaTCCGGCATAAACAAAACGTACGTTGTTAATGATCGAATGCCCGCGAGTTGAACAcgcgggcatt < 1:6389495‑M2/68‑11 (MQ=255) caTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGACTGCCCGCGAGTTGAACACGCGGGCAtttt < 1:36364001/68‑1 (MQ=255) caTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttt < 1:44515746/68‑1 (MQ=255) caTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttt > 1:8391366/1‑68 (MQ=255) caTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttt < 1:12425524/68‑1 (MQ=255) caTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttt < 1:530590/68‑1 (MQ=255) caTCCGGCATAAACAAAACGGACGTTGTTAATGTTCGAATGCCCGCGAGGGGAACACGCGGGCAtttt < 1:7778972/68‑1 (MQ=38) tCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttttt > 1:12660886/1‑68 (MQ=255) tCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttttt > 1:38523692/1‑68 (MQ=255) tCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttttt > 1:24690885/1‑68 (MQ=255) tCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttttt > 1:46917831/1‑68 (MQ=255) tCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCAtttttt > 1:34498085/1‑68 (MQ=255) cATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTagag > 1:29944689/1‑68 (MQ=255) cATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTagag > 1:47258641/1‑68 (MQ=255) aTAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTagag < 1:11260602/67‑1 (MQ=255) aTAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGt < 1:45240572/68‑1 (MQ=255) aCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACAcgcgggcattcgaacattaacaac > 1:44113453‑M2/1‑44 (MQ=255) aCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTcgc > 1:35749907/1‑68 (MQ=255) aCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTcgc > 1:14527785/1‑68 (MQ=255) aaaCGTACGTTTTAAATGTTCGAAAGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCa < 1:18762177/68‑1 (MQ=255) aaCGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCaa < 1:28843690/68‑1 (MQ=255) aaCGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCa > 1:10832923/1‑67 (MQ=255) acgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGACCACGCGGGCATTTTTTTAGAGTTCGCGAAAc > 1:48626997/1‑68 (MQ=255) cgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa > 1:41052300/1‑68 (MQ=255) cgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa < 1:332932/68‑1 (MQ=255) cgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa > 1:23033233/1‑68 (MQ=255) cgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa < 1:19787645/68‑1 (MQ=255) cgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa < 1:40682029/68‑1 (MQ=255) cgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa > 1:6025642/1‑68 (MQ=255) cgtacgtTGTAAATGTTCGACTGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa < 1:16345329/68‑1 (MQ=255) cgtacggTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACa < 1:970602/68‑1 (MQ=255) cgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGAGCAACATcc > 1:19340425/1‑67 (MQ=255) gttgttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGc > 1:22607939/1‑68 (MQ=255) tgttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGc > 1:20793408/1‑66 (MQ=255) tgttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGc > 1:14104593/1‑66 (MQ=255) gttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTTGCGCAACATCCGCACt < 1:20351883/68‑1 (MQ=255) gttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACt < 1:31732883/68‑1 (MQ=255) gttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACt < 1:30124719/68‑1 (MQ=255) gttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACt < 1:34707435/68‑1 (MQ=255) gttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACt > 1:15448546/1‑68 (MQ=255) gttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACt < 1:3793778/68‑1 (MQ=255) tGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTcaca > 1:41950915/1‑68 (MQ=255) tGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTcaca > 1:41415850/1‑68 (MQ=255) tGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTcaca > 1:42204788/1‑68 (MQ=255) tGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTcaca > 1:9187167/1‑68 (MQ=255) tGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTcaca > 1:1022536/1‑68 (MQ=255) tGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTcaca > 1:40363943/1‑68 (MQ=255) tGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTcaca > 1:27727943/1‑68 (MQ=255) tGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTcaca > 1:16787103/1‑68 (MQ=255) tGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTcaca > 1:24338212/1‑68 (MQ=255) tGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTGAGAGTTCGCGCGACATCCGCACTTcaca > 1:32360603/1‑68 (MQ=255) tGTTCGAATGCCCGCGAGTTGAACACGCGGGCACTTTTTTAGAGTTCGCGCAACATCCGCACTTcaca > 1:14897900/1‑68 (MQ=255) gTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACaa > 1:5083899/1‑68 (MQ=255) gTTCGAATGCCCGCGAGTTGAACACGCGGGCAGTTTTTTAGAGTTCGCGCAACATCCGCACTTCACaa > 1:15980076/1‑68 (MQ=255) ttCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACaa > 1:32947967/1‑67 (MQ=255) ttCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACaa > 1:49872578/1‑67 (MQ=255) ttCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACaa > 1:22266357/1‑67 (MQ=255) gAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGa < 1:46112893/68‑1 (MQ=255) gAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGa < 1:22027009/68‑1 (MQ=255) gAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGa < 1:51076590/68‑1 (MQ=255) gAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGa < 1:25386064/68‑1 (MQ=255) gAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGa < 1:2652398/68‑1 (MQ=255) gAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGa < 1:36848578/68‑1 (MQ=255) aaTGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATAGAc > 1:27392976/1‑68 (MQ=255) aTGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACa > 1:43226296/1‑68 (MQ=255) tGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACAt > 1:44895690/1‑68 (MQ=255) tGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACAt > 1:21587919/1‑68 (MQ=255) tGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGATCGCGCAACATCCCCACTTCACAATCGACAt > 1:39549298/1‑68 (MQ=255) cccGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATg > 1:17274403/1‑67 (MQ=255) cccGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCAGCACTTCACAATCGACATg > 1:25640057/1‑67 (MQ=255) ccGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATgg < 1:10016258/67‑1 (MQ=255) ccGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATgg < 1:23670665/67‑1 (MQ=255) gcgAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGGAACATCCGCACTTCACAATCGACATGGccc < 1:48132140/68‑1 (MQ=255) gcgAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGccc < 1:49505403/68‑1 (MQ=255) gAGTTGAACAcgcgggcattcgaacattaacaacgtacgttttgtttatgccggatgtgacatgaatg > 1:49199196‑M2/1‑10 (MQ=255) gAGTGGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGt < 1:47799813/68‑1 (MQ=255) gTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGc > 1:1834239/1‑68 (MQ=255) gAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGc < 1:21215179/68‑1 (MQ=255) gAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGc < 1:17572504/68‑1 (MQ=255) gAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGc < 1:12960272/68‑1 (MQ=255) aaCACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGcc > 1:28404731/1‑68 (MQ=255) acacGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCCa < 1:34000971/68‑1 (MQ=255) | CATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCCAAG > CP009273/4468771‑4468904 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |