| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 471426 | 427 (0.690) | 22 (0.050) | 7/88 | NT | 5.4% | intergenic (+19/+12) | ybaY/ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| ? | CP009273 | = 471428 | 437 (0.900) | intergenic (+21/+10) | ybaY/ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL | |||||
Only 100 of 743 total aligned reads displayed.
CTCAGGTGAATCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATACCATCACA > CP009273/471361‑471495 | tCAGGTGAATCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCc < 1:43962718‑M2/68‑2 (MQ=255) aGGTGAATCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcgg < 1:50282857‑M2/68‑4 (MQ=255) tGAATCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggaga < 1:48268457‑M2/68‑7 (MQ=255) tGAATCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcgg > 1:45893493‑M2/1‑62 (MQ=255) gAATCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagag > 1:37072094‑M2/1‑61 (MQ=255) gAATCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagag > 1:22079734‑M2/1‑61 (MQ=255) gAATCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagag > 1:3850121‑M2/1‑61 (MQ=255) gAATCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggaga > 1:15663010‑M2/1‑61 (MQ=255) aaTCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATAAAGCGACGTTAACCCTCTCCCCCcggagag > 1:35121264‑M2/1‑60 (MQ=255) aTCCGTCTTCGTCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTCACCCTCTCCGCCcggagaggg > 1:39329184‑M2/1‑59 (MQ=255) aTCCGTCTTCGGCAGTTCCCGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagaggg > 1:41842062‑M2/1‑59 (MQ=255) aTCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagaggg > 1:21295004‑M2/1‑59 (MQ=255) aTCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagaggg > 1:42682286‑M2/1‑59 (MQ=255) aTCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagaggg > 1:4623838‑M2/1‑59 (MQ=255) aTCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagaggg > 1:26063883‑M2/1‑59 (MQ=255) aTCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagaggg > 1:22809260‑M2/1‑59 (MQ=255) aTCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagaggg > 1:23215534‑M2/1‑59 (MQ=255) aTCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagaggg > 1:43268560‑M2/1‑59 (MQ=255) aTCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagaggg > 1:18031254‑M2/1‑59 (MQ=255) aTCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagaggg > 1:30731182‑M2/1‑59 (MQ=255) aTCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagaggg > 1:50521787‑M2/1‑59 (MQ=255) aTCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagaggg > 1:13988383‑M2/1‑59 (MQ=255) aTCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagaggg > 1:10027987‑M2/1‑59 (MQ=255) aTCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagagg > 1:41134817‑M2/1‑59 (MQ=255) aTCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagagg > 1:11909702‑M2/1‑59 (MQ=255) ccGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagagggtt < 1:32171240‑M2/68‑12 (MQ=255) cGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagagggtta > 1:20529765‑M2/1‑56 (MQ=255) cGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagagggtta > 1:13262840‑M2/1‑56 (MQ=255) tCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTtagt > 1:3308929/1‑68 (MQ=255) tCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTagtagt < 1:17528624/68‑1 (MQ=255) tCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAg < 1:25197890/65‑1 (MQ=255) tCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAg < 1:37870132/65‑1 (MQ=255) tCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCg < 1:29434691/67‑1 (MQ=255) tCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCg < 1:31045763/67‑1 (MQ=255) tCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGa > 1:35445385/1‑68 (MQ=255) tCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGa > 1:43686640/1‑68 (MQ=255) cTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCCGGTGAGGGTTAGTAGTTCCAGCGATAAc > 1:1248604/1‑67 (MQ=255) cTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAAc > 1:18613344/1‑67 (MQ=255) cTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAAc > 1:31838925/1‑67 (MQ=255) cTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAAc > 1:50752361/1‑67 (MQ=255) tCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagagggttaacgtcgcttaatattgc > 1:34567498‑M2/1‑37 (MQ=255) tCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAAc < 1:28236739/66‑1 (MQ=255) ccTACGCAATATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATACCGCt < 1:45029253/68‑1 (MQ=255) cGCAATATTCCGCGACGTTCACCCTCTCCGCCcggcgagggttaacgtcgcttaatattgcgtaggag > 1:42202380‑M2/1‑32 (MQ=255) cGCAATATTAAGCGACGTTAACCCTCTCCGCCcggagagggttaacgtcgcttaatattgcgtaggag > 1:20970726‑M2/1‑32 (MQ=255) cGCAATATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCaa < 1:8842855/68‑1 (MQ=255) gCAATATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAg > 1:32756334/1‑68 (MQ=255) aaTATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTc > 1:28488971/1‑68 (MQ=255) atatTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCg < 1:24426814/68‑1 (MQ=255) gCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGCTAACGCTGCAAGTCGATTTGc > 1:21619132/1‑67 (MQ=255) gCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGc > 1:49647386/1‑67 (MQ=255) gCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGc > 1:8100074/1‑67 (MQ=255) gCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGc > 1:48831798/1‑67 (MQ=255) gCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGc > 1:10827919/1‑67 (MQ=255) gCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGc > 1:3368579/1‑67 (MQ=255) gCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGc > 1:31369366/1‑67 (MQ=255) gCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGc > 1:19454731/1‑67 (MQ=255) gCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGc > 1:23589233/1‑67 (MQ=255) gCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGc > 1:249473/1‑67 (MQ=255) gCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGGCGATTTGc > 1:11457948/1‑67 (MQ=255) gACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGccc > 1:6916962/1‑67 (MQ=255) gACGTTAACCCTCACCGGCcggagagggttaacgtcccgtaatattgcgtaggagctggaactgccga < 1:16923147‑M2/68‑50 (MQ=255) cGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCt < 1:9337743/68‑1 (MQ=255) cGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCt < 1:26508934/68‑1 (MQ=255) cGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCt < 1:36380980/68‑1 (MQ=255) tAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTcc < 1:27455756/68‑1 (MQ=255) tAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTc < 1:6734103/67‑1 (MQ=255) tAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTc < 1:15008441/67‑1 (MQ=255) tAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTc < 1:14373701/67‑1 (MQ=255) tAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTc < 1:47251556/67‑1 (MQ=255) tAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTc < 1:24755478/67‑1 (MQ=255) tAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTc < 1:831231/67‑1 (MQ=255) tAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTc < 1:25644605/67‑1 (MQ=255) cccTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATACCGCTGCAAGTCGATTTGCCCGCTTCCCGa > 1:17167415/1‑68 (MQ=255) cccTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGa > 1:7287531/1‑68 (MQ=255) cccTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGa > 1:36016562/1‑68 (MQ=255) cccTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGa > 1:39695998/1‑68 (MQ=255) cccTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGa > 1:49223296/1‑68 (MQ=255) cccTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACACTGCAAGTCGATTTGCCCGCTTCCCGa > 1:6093090/1‑68 (MQ=255) ccTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGAt > 1:22358878/1‑68 (MQ=255) ccTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGAt < 1:44701737/68‑1 (MQ=255) ctctCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATa < 1:11824944/68‑1 (MQ=255) ctctCCGCCCGGAGAGGGGTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGAt > 1:30141076/1‑67 (MQ=255) ctcCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATAcc < 1:38995967/68‑1 (MQ=255) ctcCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATAcc < 1:3397982/68‑1 (MQ=255) ctcCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATAcc < 1:16416958/68‑1 (MQ=255) ctcCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATAcc < 1:19054387/68‑1 (MQ=255) ctcCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATAcc < 1:20096498/68‑1 (MQ=255) tcCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATACCa > 1:16110896/1‑68 (MQ=255) tcCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATACCa < 1:47513713/68‑1 (MQ=255) tcCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATACCa < 1:11045606/68‑1 (MQ=255) tcCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTAGATTGGCCCGCTTACCGATACCa > 1:24080742/1‑68 (MQ=255) tcCGCCCGGAGAGGGGTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATACCa > 1:25404117/1‑68 (MQ=255) ccGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATACCa > 1:46880665/1‑67 (MQ=255) ccGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATACCa > 1:40149831/1‑67 (MQ=255) ccGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATACCAt < 1:7845496/68‑1 (MQ=255) cGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATACCATc > 1:5588854/1‑68 (MQ=255) gCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATACCATca < 1:26996450/68‑1 (MQ=255) cccGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATACCATcac > 1:38118804/1‑68 (MQ=255) ccGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATACCATcac > 1:51286031/1‑67 (MQ=255) | CTCAGGTGAATCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGCCCGGAGAGGGTTAGTAGTTCCAGCGATAACGCTGCAAGTCGATTTGCCCGCTTCCCGATACCATCACA > CP009273/471361‑471495 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |