| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1546288 = | NA (NA) | 37 (0.080) +TGTAAAAGGCGC |
5/88 | NT | NA | intergenic (+40/+367) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| ? | CP009273 | 1546470 = | NA (NA) | intergenic (+222/+185) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator | |||||
Only 100 of 897 total aligned reads displayed.
TGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGC > CP009273/1546403‑1546535 | gATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCa < 1:21187556/68‑1 (MQ=255) gATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCa < 1:38043725/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCaaa > 1:29593533/1‑66 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt < 1:30878065/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt > 1:12903775/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt < 1:39695746/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAt < 1:18888457/67‑1 (MQ=255) aGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtttt < 1:17046742/68‑1 (MQ=255) aGCGGAGCGCATGAGGCTATGTTGCGTTTTTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtttt < 1:24736021/68‑1 (MQ=21) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat < 1:33454083/68‑1 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat > 1:32260265/1‑68 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat < 1:41715096/68‑1 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat < 1:3928014/68‑1 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat < 1:47592773/68‑1 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat > 1:47943582/1‑68 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat > 1:9505367/1‑68 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCat > 1:14708947/1‑68 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:35700386/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:27093717/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:28534378/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:27699931/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:37098304/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:50368237/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:50753188/68‑1 (MQ=255) cgcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTAATATTg > 1:4402680/1‑68 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGt > 1:1525593/1‑68 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGt < 1:29014586/68‑1 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGt < 1:19292169/68‑1 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGt > 1:19626011/1‑68 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGGCATTTTCATATTGt < 1:32650195/68‑1 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGAGTCATTTTAATATTGt > 1:6527930/1‑68 (MQ=18) gCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAAc > 1:40982098/1‑68 (MQ=255) gCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTTTAAAAAGCGTCATTTTAATATTGAAGACAAc > 1:46292115/1‑68 (MQ=17) gCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGAGTCATTTTAATATTGTAGACAAc > 1:22528613/1‑68 (MQ=25) cAATGTTGCTTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAAc < 1:44493815/67‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACaa < 1:29278525/66‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACg > 1:36133256/1‑68 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTAATATTGTAGACaaag > 1:10006248/1‑66 (MQ=21) cAATGTTGCGTTTGTCATAAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACaa < 1:5000492/66‑1 (MQ=255) aaTGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACg < 1:1564566/67‑1 (MQ=255) gTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAgg < 1:5553593/68‑1 (MQ=255) gTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAg > 1:24011404/1‑67 (MQ=255) tGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGc < 1:12545508/67‑1 (MQ=255) tGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGc < 1:31442580/67‑1 (MQ=255) gTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTg < 1:4890722/68‑1 (MQ=255) ttGTCATGAGTTTCAAATGTCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGtt < 1:33941484/68‑1 (MQ=255) ttGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGt < 1:45669145/67‑1 (MQ=255) ttGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGt < 1:34486498/67‑1 (MQ=255) ttGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGt < 1:43144957/67‑1 (MQ=255) tgtctacaatatgaaaatggcgctgtaaaaggcgcCATTTTCATATTGTAGACAACGTAGGCTTTGt > 1:24495918‑M2/36‑67 (MQ=255) tcatcaGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCAt > 1:24303255/1‑68 (MQ=255) catcaGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTATACAACGTAGGCTTTGTTCATg < 1:20399583/68‑1 (MQ=255) catcaGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATg < 1:42688511/68‑1 (MQ=255) tcaGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGcc > 1:45136896/1‑68 (MQ=255) ttCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGAt > 1:17944204/1‑67 (MQ=40) tgaaaatggcgctgtaaaaggcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGa < 1:8726994‑M2/42‑1 (MQ=255) aaatggcgctgtaaaaggggaCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgcg < 1:36504799‑M2/46‑1 (MQ=255) aaaTGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgcgg < 1:44822242/68‑1 (MQ=35) aatggcgctgtaaaaggcgcCATTTTCATATTGTAGACTACGTAGGCTTTGTTCATGCCGGATgcggc < 1:20651321‑M2/48‑1 (MQ=255) atggcgctgtaaaaggcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgcggcg > 1:29958537‑M2/20‑68 (MQ=255) atggcgctgtaaaaggcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgcggcg < 1:26303330‑M2/49‑1 (MQ=255) aTGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgcggcg > 1:43698925/1‑68 (MQ=35) aTGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgcggcg > 1:14191122/1‑68 (MQ=35) aTGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgcggcg > 1:49198060/1‑68 (MQ=35) aTGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgcggcg > 1:26689317/1‑68 (MQ=35) aTGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgcggcg > 1:6867936/1‑68 (MQ=35) tggcgctgtaaaaggcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGt < 1:38742643‑M2/50‑1 (MQ=255) tGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGt < 1:17584923/68‑1 (MQ=35) ggCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTg < 1:41446786/68‑1 (MQ=35) gcgctgtaaaaggcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGa > 1:16375249‑M2/17‑68 (MQ=255) tgtaacaggcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGc < 1:31849104‑M2/56‑1 (MQ=255) tgtaaaaggcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGc < 1:33106053‑M2/56‑1 (MQ=255) tgtaaaaggcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGc < 1:51304200‑M2/56‑1 (MQ=255) tgtaaaaggcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGc < 1:6067583‑M2/56‑1 (MQ=255) tgtaaaaggcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGc < 1:28013346‑M2/56‑1 (MQ=255) tGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGc < 1:8271005/68‑1 (MQ=35) tGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGc < 1:47146101/68‑1 (MQ=35) tGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGc < 1:22905996/68‑1 (MQ=35) aaaaggcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCt < 1:11543050‑M2/58‑1 (MQ=255) aaaaggcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCt < 1:48514381‑M2/58‑1 (MQ=255) aaaaggcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCt < 1:13581729‑M2/58‑1 (MQ=255) aaaGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTa < 1:11042150/68‑1 (MQ=35) aaggcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTa > 1:34913219‑M2/8‑67 (MQ=255) aaGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTAt < 1:7318751/68‑1 (MQ=35) aGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTAt > 1:1608390/1‑67 (MQ=35) gcgcCATTTTCATTTTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGGGTGAACGCCTTATCCg > 1:22218595‑M2/5‑68 (MQ=255) gcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCg > 1:10436845‑M2/5‑68 (MQ=255) gcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCg > 1:8000517‑M2/5‑68 (MQ=255) gcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCGTATCCg > 1:37698365‑M2/5‑68 (MQ=255) gcccCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCg > 1:18457007‑M2/5‑68 (MQ=255) gCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATTCGGCGTGAACGCGTTCTCCg > 1:49672972/1‑68 (MQ=11) gCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGATCGCCTTATCCg > 1:2353346/1‑68 (MQ=25) gCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCg > 1:25060193/1‑68 (MQ=35) gCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCg > 1:12191293/1‑68 (MQ=35) gCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCg > 1:25830231/1‑68 (MQ=35) gCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCg > 1:46757017/1‑68 (MQ=35) gCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCg > 1:38365549/1‑68 (MQ=35) gCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCg > 1:40334620/1‑68 (MQ=35) gCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCg > 1:42064933/1‑68 (MQ=35) gCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTAGCCg > 1:21855662/1‑68 (MQ=25) | TGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGC > CP009273/1546403‑1546535 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |