| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2925176 = | NA (NA) | 16 (0.030) | 7/92 | NT | NA | noncoding (1/30 nt) | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 2925206 = | NA (NA) | intergenic (+37/+18) | ygdG/fucO | Ssb‑binding protein, misidentified as ExoIX/L‑1,2‑propanediol oxidoreductase | |||||
Only 100 of 887 total aligned reads displayed.
AATTTACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTCAC > CP009273/2925140‑2925273 | aTTTACAGCAATTGCGGTTGGTACGGTAACGGCGAGCC‑GATACGCCGCAAACGTCGTATCCGGCATTa < 1:10009048/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:46541525/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:12968785/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:36458223/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:20269968/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:25537209/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:48143316/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:29935579/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGGCGTATCCGGCATTa < 1:23361622/68‑1 (MQ=255) aCAGCAATTGCGGTTGGTACGGTAACGGCGAGCCCGATACGCCGCAAACGTCGTATCCGGCATTATc > 1:39308488/1‑67 (MQ=255) gCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATcaca > 1:11014222/1‑67 (MQ=255) gCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCAATATcaca > 1:38899883/1‑67 (MQ=255) aaTTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATcaca < 1:46778102/65‑1 (MQ=255) aaTTGCGGTTGGTACGGTAACGGCGAGCCGGATAAGCCGCAAACGTCGTATCCGGCATTATAACATCa > 1:3366629/1‑68 (MQ=255) aaTTGCGGTTGGTACGGTAACGGCGAGCCCGATAAGCCGCAAACCGCGTATGCGGGATTTTAACAtaa > 1:30578440/1‑66 (MQ=255) tGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAgcg < 1:19795496/68‑1 (MQ=255) gCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAgcgc < 1:22897325/68‑1 (MQ=255) gCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAgcgc < 1:16499227/68‑1 (MQ=255) gCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAgcgc < 1:25151450/68‑1 (MQ=255) gCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAgcgc < 1:26728082/68‑1 (MQ=255) gCGGGTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAgcgc < 1:39583097/68‑1 (MQ=255) taaatgcgctgatgtgataatgccggatacgacgtttgcggcgtatccggcATTATCACATCAgcgc < 1:3275640‑M2/16‑1 (MQ=255) ggTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCa < 1:3257712/67‑1 (MQ=255) ggTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCAt > 1:16071442/1‑68 (MQ=255) ggTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCAt < 1:2260514/68‑1 (MQ=255) ggTTGGTACGGTAACGGCGAGCCGGATAAGCCGCAAACGTCGTATCCCGGATTTTCACCTAAGCGCAt > 1:41279518/1‑68 (MQ=255) ttGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCAtt < 1:15044790/67‑1 (MQ=255) tGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCAttt < 1:44046715/67‑1 (MQ=255) gcgctgatgtgataatGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTa < 1:49999817‑M1/51‑1 (MQ=255) aCGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAg < 1:42936894/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:28414140/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:23917430/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:40292844/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt > 1:37605561/1‑68 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:38485343/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:47798656/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:10288596/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:7460059/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:13199031/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:5610568/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:50942118/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:50454583/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:17089031/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:48562735/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:19285096/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:21048875/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:24386478/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:47357565/68‑1 (MQ=255) ggCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATg < 1:13747365/68‑1 (MQ=255) ggCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATg < 1:8779763/68‑1 (MQ=255) ggCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGGATg > 1:28994567/1‑68 (MQ=255) taatGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATgg < 1:43391853‑M1/64‑1 (MQ=255) GCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTaaa < 1:3687279‑M1/68‑1 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTaaa > 1:42256234‑M1/1‑66 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:18658396‑M1/1‑68 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:6636573‑M1/1‑68 (MQ=255) GGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGct > 1:9516498‑M1/1‑68 (MQ=255) GGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGct > 1:27175004‑M1/1‑68 (MQ=255) TACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGctct > 1:37235478‑M1/1‑67 (MQ=255) TACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGctct > 1:24664319‑M1/1‑67 (MQ=255) TACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGctct > 1:26323655‑M1/1‑67 (MQ=255) TACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGctct > 1:14523560‑M1/1‑67 (MQ=255) TACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGctct > 1:40817461‑M1/1‑67 (MQ=255) TACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGctct > 1:35305459‑M1/1‑67 (MQ=255) TACGCCGCAAACGGCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGctct > 1:31986647‑M1/1‑67 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTAc < 1:5249716‑M1/68‑1 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTAc > 1:31249849‑M1/1‑68 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTAc < 1:15695135‑M1/68‑1 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTAc > 1:17762180‑M1/1‑68 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTAc < 1:49480709‑M1/68‑1 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTAc < 1:4532287‑M1/68‑1 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTAc < 1:49128700‑M1/68‑1 (MQ=255) CGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACa > 1:3471147‑M1/1‑68 (MQ=255) CGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACa < 1:18271999‑M1/68‑1 (MQ=255) ccgcAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAat > 1:48778321/1‑68 (MQ=255) gtttccggcgtacccggcATTATAACATCCGCGCATTTACCCGGCGGTATGGTAAAGCTCTACAatat < 1:69321‑M2/50‑1 (MQ=255) gcAAATGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAatat < 1:5893659/68‑1 (MQ=255) gcAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAatat < 1:25914498/68‑1 (MQ=255) gcAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAatat < 1:11441369/68‑1 (MQ=255) gcAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAatat < 1:14183088/68‑1 (MQ=255) gcAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAatat < 1:41813493/68‑1 (MQ=255) aaaCGTCGTATCCGGCATTATCGCATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATcc < 1:16881638/68‑1 (MQ=255) aaaCGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATcc < 1:1082841/68‑1 (MQ=255) aaCGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATcc > 1:46188695/1‑67 (MQ=255) aaCGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATcc > 1:21883431/1‑67 (MQ=255) aaCGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCt < 1:4153230/68‑1 (MQ=255) tcgtATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCaa > 1:7897211/1‑67 (MQ=255) cgtatccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGc < 1:43794184‑M2/58‑1 (MQ=255) cgtatccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGc < 1:458776‑M2/58‑1 (MQ=255) cgtatccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGc < 1:64115‑M2/58‑1 (MQ=255) cgtatccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGc > 1:34067127‑M2/11‑68 (MQ=255) cgtatccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGc < 1:8463526‑M2/58‑1 (MQ=255) tatccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGt > 1:12497849‑M2/9‑68 (MQ=255) tccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGtt > 1:9135239‑M2/7‑67 (MQ=255) ccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGc < 1:39982985‑M2/63‑1 (MQ=255) ccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGc < 1:37888114‑M2/63‑1 (MQ=255) gcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTc > 1:3323356‑M2/3‑68 (MQ=255) gcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTc > 1:40574107‑M2/3‑68 (MQ=255) aTTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTCAc > 1:27644075/1‑68 (MQ=255) aTTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTCAc > 1:44675485/1‑68 (MQ=255) | AATTTACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTCAC > CP009273/2925140‑2925273 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |