| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1397112 | 137 (0.380) | 9 (0.030) | 5/96 | NT | 5.2% | noncoding (1069/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 1397156 | 213 (0.690) | noncoding (1113/1195 nt) | IS5 | repeat region | |||||
CGCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1397041‑1397112‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccttTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTTT < CP009273/1397156‑1397092 CGCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCC > 1:12326524/1‑67 GCGAACCATGAACGTTTTACCGGTGCCGCCTTCTTGGCCAGGACAACCATAAAAGCGCACCGTGCCGC < 1:26491119/68‑1 GCGAACCATGAACGTTTTACCCGAGCCGCCTTTTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGC < 1:4601956/68‑1 GCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGC < 1:5855472/68‑1 GCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGC < 1:29843993/68‑1 GCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGC < 1:24574772/68‑1 GCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGC < 1:23527358/68‑1 GCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGC < 1:17861997/68‑1 GCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCG > 1:23408385/1‑67 GCGAACCATGAACCGTTTACCCGAGCCGCATTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGC < 1:23109860/68‑1 GAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCC < 1:13966296/67‑1 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:10373780/1‑67 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:9487623/1‑67 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:62712/1‑67 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:25828007/1‑67 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:14014065/1‑67 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:11355290/1‑67 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:12747530/1‑67 ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:12917925/1‑67 ACCATGAACGTTTAACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:12558727/1‑67 CCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCC > 1:5631656/1‑44 TCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGG < 1:9071156/68‑1 ACAACCATAAAAGCGCACCGTGCCGCCTTTGCGGCTGCAATAGCCGGCAAGAAATGGCTGGTACAATA > 1:14178754/1‑68 ACAACCATAAAAGCGCACCGTGCCGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAA < 1:17731968/66‑1 ACAACCATAAAAGCGCACCGTGCCGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACA < 1:25553787/65‑1 AGCGCACCGTGCCGCCTTTGGCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCG > 1:1324722/1‑68 AGCGCACCGTGCCGCCTTTGCCGCTGCAATAGGCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCG > 1:10122436/1‑68 AGCGCACCGTGCCGCCTTTGCCGCTGCAATAGCCGTCAAGCAAGGGCGGGCACAATATGGGCACGGCG > 1:4367119/1‑68 AGCGCACCGTGCCGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCG > 1:11329394/1‑68 AGCGCACCGTGCCGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCG > 1:28428239/1‑68 GCCGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGC > 1:1794215/1‑67 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCTAGGCGGCACGGTGGGCT > 1:27960674/1‑68 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:14489239/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:27843038/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:26505134/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:11064581/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:6965532/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:7546374/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:5069131/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:25223490/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:25201843/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:23753354/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT > 1:12705414/1‑68 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:16417190/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:15422771/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:9467984/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:20292090/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT > 1:20762861/1‑68 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT > 1:20911051/1‑68 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT > 1:15297573/1‑68 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:22823016/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:14491821/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:12645987/68‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGC < 1:14453754/67‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGC < 1:3601788/67‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGC < 1:15520044/67‑1 CGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGCGCAAGGCGGCACGGTGCGCT < 1:28264453/68‑1 CGCCTTTGCCGCGGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:25770754/68‑1 CGCCTTTGCCGATGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGat > 1:20409042/1‑66 CGCCTAAGCCGCTGCAATAGCCGGCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCT < 1:5263757/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATTTGGGCAAGGCGGCACGGTGCGCTT < 1:20129131/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTT < 1:7912842/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTT < 1:5069400/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTT < 1:7826154/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTT < 1:9859083/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTT < 1:11605976/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTT < 1:26130120/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTT < 1:25996634/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTT < 1:11822499/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTT < 1:22286521/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTT < 1:21671504/68‑1 GCCTTTGCCGCTGCAATAGCCGTCAAGAAATGCCTGGAACTATATGGGCAAGGCGGCACGGTGCGCTT < 1:22319394/68‑1 CCTTTGCCGCTGCAATAGCCGTCAAGAAGTGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTT > 1:10832949/1‑68 CTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTTT > 1:29031194/1‑68 CTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTTT > 1:6590138/1‑68 CTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTTT > 1:25625130/1‑68 CTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTTT > 1:7791777/1‑68 CTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTTT > 1:20045951/1‑68 CTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTTT > 1:19267502/1‑68 CTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTTT > 1:18228202/1‑68 CTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTT < 1:25996868/67‑1 CGCGAACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1397041‑1397112‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccttTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGCAAGGCGGCACGGTGCGCTTTT < CP009273/1397156‑1397092 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |