New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1397112137 (0.380)9 (0.030) 5/96 NT 5.2% noncoding (1069/1195 nt) IS5 repeat region
?CP009273 = 1397156 213 (0.690)noncoding (1113/1195 nt) IS5 repeat region

Only 100 of 361 total aligned reads displayed.

CATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGATG  >  CP009273/1397089‑1397220
                                                                   |                                                                
cATAAAAGCGCACCGTGCCGCCTTGCCCATAATGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCa                                                                  >  1:13968744/1‑68 (MQ=255)
   aaaaGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaag                                                               >  1:20045951‑M2/1‑65 (MQ=255)
   aaaaGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaag                                                               >  1:7791777‑M2/1‑65 (MQ=255)
    aaaGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCACTTCTTGACGGCTATTGCAGCGGCAaagg                                                              >  1:10832949‑M2/1‑64 (MQ=255)
     aaGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggc                                                             <  1:5069400‑M2/68‑6 (MQ=255)
     aaGCGCACCGTGCCGCCTTGCCCATATAGTTCCAGGCATTTCTTGACGGCTATTGCAGCGGCAaaggc                                                             <  1:22319394‑M2/68‑6 (MQ=255)
     aaGCGCACCGTGCCGCCTTGCCCAAATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggc                                                             <  1:20129131‑M2/68‑6 (MQ=255)
      aGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcg                                                            <  1:23753354‑M2/68‑7 (MQ=255)
      aGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcg                                                            <  1:25223490‑M2/68‑7 (MQ=255)
      aGCCCACCGTGCCGCCTAGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcg                                                            >  1:27960674‑M2/1‑62 (MQ=255)
       gcgcACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcg                                                            <  1:14453754‑M2/67‑7 (MQ=255)
         gcACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcggc                                                          >  1:1794215‑M2/1‑59 (MQ=255)
          cACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGcggcgg                                                        >  1:7022881/1‑68 (MQ=255)
          cACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGcggcgg                                                        >  1:9679911/1‑68 (MQ=255)
          cACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCATGACGGCTATTGCAGCGGCAAAGGcggcgg                                                        >  1:10021772/1‑68 (MQ=255)
           aCCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGt                                                       >  1:12114848/1‑68 (MQ=255)
           aCCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGt                                                       >  1:659353/1‑68 (MQ=255)
           aCCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCATGACGGCTATTGCAGCGGCAAAGGCGGCGGt                                                       >  1:21587500/1‑68 (MQ=255)
             cGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTc                                                     <  1:22502481/68‑1 (MQ=255)
             cGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTc                                                     <  1:20754963/68‑1 (MQ=255)
                gccgccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCa                                                  >  1:2689339/1‑68 (MQ=255)
                  cgccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAg                                                 <  1:1476567/67‑1 (MQ=255)
                  cgccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGCCAaaggcggcacggtgcgct                                                >  1:1324722‑M2/1‑50 (MQ=255)
                  cgccTTGCCCATATTGTTCCAGCCATTTCTTGACGCCTATTGCAGCGGCAaaggcggcacggtgcgct                                                >  1:10122436‑M2/1‑50 (MQ=255)
                  cgccGTGCCCATATTGTGCCCGCCCTTGCTTGACGGCTATTGCAGCGGCAaaggcggcacggtgcgct                                                >  1:4367119‑M2/1‑50 (MQ=255)
                     cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa                                             >  1:9482162/1‑68 (MQ=255)
                     cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa                                             >  1:7428127/1‑68 (MQ=255)
                     cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa                                             >  1:24983120/1‑68 (MQ=255)
                     cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa                                             >  1:12578341/1‑68 (MQ=255)
                     cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa                                             >  1:19583895/1‑68 (MQ=255)
                     cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa                                             >  1:29548394/1‑68 (MQ=255)
                       tGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAAtt                                           <  1:22705675/68‑1 (MQ=255)
                           cATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTgtgt                                       <  1:8814441/68‑1 (MQ=255)
                           cATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTgtgt                                       <  1:21306035/68‑1 (MQ=255)
                             tatTGTACCAGCCATTTCTTGCCGGCTATTGCAGCCGCAaaggcggcacggtgcgcttttatggttgt                                     >  1:14178754‑M2/1‑39 (MQ=255)
                              atTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTcc                                     >  1:18124604/1‑67 (MQ=255)
                              atTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTcc                                     >  1:12860093/1‑67 (MQ=255)
                              atTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTcc                                     >  1:55901/1‑67 (MQ=255)
                               ttGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGc                                   >  1:28400892/1‑68 (MQ=255)
                               ttGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGc                                   >  1:27402126/1‑68 (MQ=255)
                               ttGTTCCAGCCATTTCTTGACGGCTATTGAAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGc                                   >  1:10406754/1‑68 (MQ=255)
                                tGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCa                                  >  1:18268772/1‑68 (MQ=255)
                                tGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCa                                  >  1:26624108/1‑68 (MQ=255)
                                   tCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAAcc                               >  1:28823487/1‑68 (MQ=255)
                                   tCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAAcc                               >  1:15648296/1‑68 (MQ=255)
                                   tCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAAcc                               >  1:28138123/1‑68 (MQ=255)
                                   tCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAAcc                               >  1:25410245/1‑68 (MQ=255)
                                   tCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAAcc                               >  1:22886614/1‑68 (MQ=255)
                                   tCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAAc                                <  1:14827191/67‑1 (MQ=255)
                                   tCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTACCAGCAAATTGTGTCCGCAAcc                               >  1:1747334/1‑68 (MQ=255)
                                     cAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGt                             <  1:26456083/68‑1 (MQ=255)
                                        ccATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGa                           >  1:15391631/1‑67 (MQ=255)
                                        ccATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGa                           >  1:5320725/1‑67 (MQ=255)
                                        ccATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGa                           >  1:3317677/1‑67 (MQ=255)
                                          aTTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCa                        <  1:21100309/68‑1 (MQ=255)
                                          aTTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGGCCGCAACCGTGACCa                        <  1:153137/68‑1 (MQ=255)
                                           tttCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCAt                       <  1:16514634/68‑1 (MQ=255)
                                             tCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCAttt                     >  1:22063459/1‑68 (MQ=255)
                                              cTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCAtttt                    <  1:23440531/68‑1 (MQ=255)
                                              cTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCAttt                     >  1:28597621/1‑67 (MQ=255)
                                              cTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCAttt                     >  1:19140540/1‑67 (MQ=255)
                                                tGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCa                  <  1:14626850/68‑1 (MQ=255)
                                                  aCGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCAcc                >  1:11266921/1‑68 (MQ=255)
                                                    ggCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCgg              >  1:3064874/1‑68 (MQ=255)
                                                    ggCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCgg              <  1:29145277/68‑1 (MQ=255)
                                                     gCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGCCCATTTTCACCgg              >  1:23055801/1‑67 (MQ=255)
                                                     gCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCgg              >  1:20859659/1‑67 (MQ=255)
                                                          tGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTc         >  1:28666012/1‑67 (MQ=255)
                                                          tGCAGCAGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCa        <  1:3859833/68‑1 (MQ=255)
                                                           gCAGCGGCAAAGGCGGCGGTTACCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCAc       >  1:9138126/1‑68 (MQ=255)
                                                            cAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACg      >  1:17890126/1‑68 (MQ=255)
                                                             aGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACgg     >  1:4769427/1‑68 (MQ=255)
                                                             aGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACgg     >  1:11448474/1‑68 (MQ=255)
                                                              ggggCATAGGCGGTGGTTCGCAGCAAATTGTGTCCGCAACCGTGAGCATTTTCACCGGGCGTCACGGa    <  1:16993456/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGTCCTTTTTCAGCGGGCGTCACGGa    <  1:241786/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:8107690/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:866289/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:5944770/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:10580130/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:6278536/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:8456660/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:16697922/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:16307884/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:15206117/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:24455961/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:13604859/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:25954467/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:26010924/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:16063937/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:11699110/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:18790583/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:29215985/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:18654407/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:3587308/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGa    <  1:15809578/66‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGATg  >  1:28869424/1‑68 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGATg  <  1:6788030/68‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGATg  >  1:25753661/1‑68 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGATg  <  1:25628278/68‑1 (MQ=255)
                                                                ggCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGGGACCATTTTCACCGGGCGTCACGGa    <  1:9055681/66‑1 (MQ=255)
                                                                   |                                                                
CATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATTGTGTCCGCAACCGTGACCATTTTCACCGGGCGTCACGGATG  >  CP009273/1397089‑1397220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.