| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1397112 | 137 (0.380) | 9 (0.030) | 5/96 | NT | 5.2% | noncoding (1069/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 1397156 | 213 (0.690) | noncoding (1113/1195 nt) | IS5 | repeat region | |||||
Only 100 of 356 total aligned reads displayed.
ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATT > CP009273/1397046‑1397179 | aCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTg < 1:7811564/68‑1 (MQ=255)aCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTg < 1:29538478/68‑1 (MQ=255)aCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTg < 1:27214393/68‑1 (MQ=255)aCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTg < 1:16689378/68‑1 (MQ=255)aCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTg < 1:19353200/68‑1 (MQ=255)aCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTg < 1:16303985/68‑1 (MQ=255)aCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTg < 1:21658617/68‑1 (MQ=255)aCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTg < 1:8541162/68‑1 (MQ=255)aCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTg < 1:24291021/68‑1 (MQ=255)aCCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTT > 1:62712‑M1/1‑67 (MQ=255)aCCATGAACGGTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTg < 1:7896/68‑1 (MQ=255) ccATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGc < 1:18809239/68‑1 (MQ=255) ccATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGc < 1:9294723/68‑1 (MQ=255) ccATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCCCACCGTGCCGCCTTGc < 1:12918801/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:15732682/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:6418864/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:15591961/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:26006794/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:18034633/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:21854457/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:11571640/68‑1 (MQ=255) cATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGcc < 1:9842281/68‑1 (MQ=255) gAACGTTTTCCCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCat < 1:13239036/68‑1 (MQ=255) gAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCat < 1:22891235/68‑1 (MQ=255) gAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCat < 1:22757969/68‑1 (MQ=255) cGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATAtt > 1:24898871/1‑68 (MQ=255) cGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATAtt > 1:12863421/1‑68 (MQ=255) gTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTg > 1:17198266/1‑68 (MQ=255) gTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTg < 1:20313439/68‑1 (MQ=255) gTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTg > 1:15071195/1‑68 (MQ=255) tttACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGtt > 1:2988737/1‑68 (MQ=255) tttACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGt < 1:3124677/67‑1 (MQ=255) tttACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGt < 1:760560/67‑1 (MQ=255) aCCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCa > 1:18538220/1‑68 (MQ=255) cgggAGCGGCGTGCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAg < 1:11933414/65‑1 (MQ=255) cccGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCa > 1:12304163/1‑67 (MQ=255) cccGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCa > 1:8026939/1‑67 (MQ=255) cccGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAg < 1:5018636/68‑1 (MQ=255) ccGAGCCGCCTTCTTCGCCAGGACAACCATATAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGc < 1:2901876/68‑1 (MQ=255) ccGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAg > 1:19855182/1‑67 (MQ=255) ccGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGc < 1:22483317/68‑1 (MQ=255) cgccTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCAtt < 1:17680192/66‑1 (MQ=255) cgccTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCAtt > 1:26285827/1‑66 (MQ=255) ttcttcGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTg > 1:25085100/1‑67 (MQ=255) tcttcGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGAc > 1:25793116/1‑68 (MQ=255) tcttcGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGAc > 1:3950893/1‑68 (MQ=255) ttcGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACgg < 1:21285875/68‑1 (MQ=255) ttcGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACgg < 1:4687727/68‑1 (MQ=255) ttcGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACgg < 1:22318126/68‑1 (MQ=255) ttcGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACgg < 1:27544250/68‑1 (MQ=255) tcGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACg > 1:1774846/1‑66 (MQ=255) cGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCt < 1:20628983/68‑1 (MQ=255) cGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCt < 1:14275407/68‑1 (MQ=255) ccAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTAt > 1:8953998/1‑68 (MQ=255) gACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCa > 1:11399997/1‑68 (MQ=255) aCAACCATAAAAGCGCACCGTGCCGCCTTtgccgctgcaatagccgtcaagaaatggctggaaca < 1:25553787‑M1/65‑37 (MQ=255) aCAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCa > 1:13521195/1‑67 (MQ=255) cAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGc > 1:3465263/1‑68 (MQ=255) aCCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCgg < 1:10142753/68‑1 (MQ=255) aaaaGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaag > 1:6590138‑M2/1‑65 (MQ=255) aaaaGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaag > 1:19267502‑M2/1‑65 (MQ=255) aaaGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCACTTCTTGACGGCTATTGCAGCGGCAaagg > 1:10832949‑M2/1‑64 (MQ=255) aaGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggc < 1:25996634‑M2/68‑6 (MQ=255) aaGCGCACCGTGCCGCCTTGCCCAAATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggc < 1:20129131‑M2/68‑6 (MQ=255) aGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGCCGGCTATTGCAGCGGCTtaggcg < 1:5263757‑M2/68‑7 (MQ=255) aGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcg < 1:25201843‑M2/68‑7 (MQ=255) aGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcg < 1:11064581‑M2/68‑7 (MQ=255) aGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcg < 1:6965532‑M2/68‑7 (MQ=255) aGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcg < 1:16417190‑M2/68‑7 (MQ=255) aGCCCACCGTGCCGCCTAGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcg > 1:27960674‑M2/1‑62 (MQ=255) gcgcACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcg < 1:14453754‑M2/67‑7 (MQ=255) cACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCATGACGGCTATTGCAGCGGCAAAGGcggcgg > 1:10021772/1‑68 (MQ=255) aCCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGt > 1:5534435/1‑68 (MQ=255) aCCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGt > 1:7399040/1‑68 (MQ=255) aCCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGt > 1:22169964/1‑68 (MQ=255) aCCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGt > 1:29160080/1‑68 (MQ=255) cGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTc < 1:20754963/68‑1 (MQ=255) gccgccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCa > 1:2689339/1‑68 (MQ=255) cgccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgct < 1:23753354‑M1/68‑63 (MQ=255) cgccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgct < 1:15422771‑M1/68‑63 (MQ=255) cgccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgct < 1:12645987‑M1/68‑63 (MQ=255) cgccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgct > 1:12705414‑M1/1‑6 (MQ=255) cgccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgct < 1:7546374‑M1/68‑63 (MQ=255) cgccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgct < 1:26505134‑M1/68‑63 (MQ=255) cgccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgct < 1:27843038‑M1/68‑63 (MQ=255) cgccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgct < 1:14491821‑M1/68‑63 (MQ=255) cgccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgcgcaaggcggcacggtgcgct < 1:28264453‑M1/68‑63 (MQ=255) cgccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAaaggcggcacggtgcgct > 1:28428239‑M2/1‑50 (MQ=255) cgccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAg < 1:1476567/67‑1 (MQ=255) cgccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAg < 1:14046738/67‑1 (MQ=255) cgccTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAg < 1:20816403/67‑1 (MQ=255) cgccGTGCCCATATTGTGCCCGCCCTTGCTTGACGGCTATTGCAGCGGCAaaggcggcacggtgcgct > 1:4367119‑M2/1‑50 (MQ=255) gccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgctt < 1:5069400‑M1/68‑64 (MQ=255) gccTTtgccgctgcaatagccgtcaagaaatggctggaacaatatgggcaaggcggcacggtgcgctt < 1:11822499‑M1/68‑64 (MQ=255) cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa > 1:13756962/1‑68 (MQ=255) cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa > 1:19583895/1‑68 (MQ=255) cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa > 1:14656557/1‑68 (MQ=255) cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa > 1:1525454/1‑68 (MQ=255) cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa > 1:9482162/1‑68 (MQ=255) cTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCaaa > 1:25745252/1‑68 (MQ=255) | ACCATGAACGTTTTACCCGAGCCGCCTTCTTCGCCAGGACAACCATAAAAGCGCACCGTGCCGCCTTGCCCATATTGTTCCAGCCATTTCTTGACGGCTATTGCAGCGGCAAAGGCGGCGGTTCCCAGCAAATT > CP009273/1397046‑1397179 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |