New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2707629 =NA (NA)6 (0.020)
+TTC		 4/106 NT NA intergenic (+40/+169) srmB/yfiE ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator
?CP009273 = 3323920 NA (NA)intergenic (+165/+21) dacB/obgE D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair

GCCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2707675‑2707629
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCAGCCTGATGCGCTACGCTTATCAGGCCTACA  <  CP009273/3323920‑3323887
                                               |||                                  
ttCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCGCTAC                  <  1:7441162/66‑1
   ACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCGCTACGCT               <  1:12034911/68‑1
     GTAGGCCTGATAAGCGTCGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGAAGCGCTACGCTTA             <  1:11377666/68‑1
         GCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGT                                      <  1:5668581/39‑1
           CTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCGCTACGCTTATCAGGC       <  1:15957201/68‑1
           CTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCGCTACGCTTATCAGG        <  1:23498405/67‑1
                AAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCAGCCGCCTGATGCGCTACGCTTATCAGGCCTACg  <  1:27918292/68‑2
                                               |||                                  
GCCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2707675‑2707629
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCAGCCTGATGCGCTACGCTTATCAGGCCTACA  <  CP009273/3323920‑3323887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.