| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3416677 = | 202 (0.560) | 12 (0.040) | 6/94 | NT | 6.0% | intergenic (+124/+105) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon |
| ? | CP009273 | 3416700 = | 206 (0.680) | intergenic (+147/+82) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon | |||||
GGGCCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGATTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3416750‑3416677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggatttgTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGC > CP009273/3416700‑3416766 GGGCCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCG > 1:9497985/1‑68GGGCCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCG > 1:8185089/1‑68GGGCCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCG > 1:15479408/1‑68 GCCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA > 1:19435706/1‑68 GCCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA > 1:11527037/1‑68 GCCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA > 1:4757546/1‑68 GCCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGG > 1:3974994/1‑67 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGAT > 1:7087811/1‑68 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGAT > 1:7542467/1‑68 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGAT > 1:1604844/1‑68 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGAT > 1:18320832/1‑68 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:5545507/67‑1 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:5132859/67‑1 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:10884099/67‑1 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:29474482/67‑1 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:29452923/67‑1 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:25447065/67‑1 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:24634946/67‑1 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:2367948/67‑1 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:8052874/67‑1 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:22155544/67‑1 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:8953813/67‑1 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:18538034/67‑1 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:14059049/67‑1 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:16827044/67‑1 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:13197337/67‑1 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:12651695/67‑1 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:15481511/67‑1 CCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:11949800/67‑1 CCTTTTGTTTTATCTGTGGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGA < 1:22187958/67‑1 CTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGATT < 1:13414493/68‑1 CTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGATT < 1:29574055/68‑1 CTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGATT < 1:3268037/68‑1 CTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGATT < 1:8039844/68‑1 CTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGAT < 1:17200841/67‑1 CTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGAT < 1:4477394/67‑1 CTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGAT < 1:13183166/67‑1 CTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGAT < 1:10962428/67‑1 CTTTTGTTTTATCTGTTGTTTGTCGGGGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGATT < 1:16122618/68‑1 TGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGATTaga > 1:7493927/1‑64 TTTATCTGTTGGTTGTCGGTGAACACTCTCCCG‑AGTAGGACAATTCCGCCGGGAGCGGATTTGTCCT < 1:26508818/67‑1 TTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGATTTGTCCTAC < 1:5601383/68‑1 TTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGATTTGTCCTAC < 1:7443962/68‑1 TTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGATTTGTCCTAC < 1:25421303/68‑1 TTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGATTTGTCCTAC < 1:2000080/68‑1 TTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGATTTGTCCTAC < 1:18083463/68‑1 TTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGATTTGTCCTAC < 1:1772226/68‑1 TCTGTTGTTTGTCGGTGAACACTCTCCCGAAGTATGACAAATCCGCCGGGAGCGGATTTGTCCTACTC < 1:16893421/68‑1 TCTGTTGTTTGTCGGTGAACACTCTCCCGAAGTAGGACAAATCCGCCGGGAGCGGATTTGTCCTACTC < 1:14579274/68‑1 TGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGATTTGTCCTACTCGGG < 1:239348/68‑1 GTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGATTTGTCCTACTCGGGAGAG < 1:28543075/68‑1 TTTGTCGGTGAACACTCTCCCG‑AGTAGGACAACTCCGCCGGGAGCGGATTTGTCCTACTCGGGAGAGT < 1:28702058/68‑1 AGGACAAATCCGCCGGGAGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAA > 1:6735977/1‑67 GCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCC > 1:27061787/1‑68 GCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCC > 1:1834225/1‑68 GGATTTGTCCTACTCGGGAGAGTGTTCACCGTCAAAGAAGAGATAAAACAAAAGGCCCAGTCTTCCG < 1:1438547/67‑1 GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGA < 1:27581997/68‑1 GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGA < 1:10931142/68‑1 GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGA < 1:3584071/68‑1 GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGA < 1:12885329/68‑1 GGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCG < 1:14545978/67‑1 TTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTG > 1:15665151/1‑68 TTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTG > 1:22663467/1‑68 TTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTG > 1:6372544/1‑68 TGTCCTACTCGGTAGAGTGTTCACCGACAAACCCCAGATAAAACAAAAGGCCCAGTCTTCCGACTGAG < 1:27677590/68‑1 TGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGCTAAAACAAAAGGCCCAGTCTTCCGACTGAG < 1:10233529/68‑1 TGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAG < 1:25548597/68‑1 TGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAG < 1:28925927/68‑1 GTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGC < 1:23761119/68‑1 GTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGC < 1:20994297/68‑1 GTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGC < 1:20101867/68‑1 GTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGC < 1:11862576/68‑1 GTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGC < 1:25131026/68‑1 GTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGC < 1:29798619/68‑1 GTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGC < 1:9005243/68‑1 GTCCTACTCGGGAGAGTGTTCAACGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGC < 1:11710561/68‑1 GGGCCTTTTGTTTTATCTGTTGTTTGTCGGTGAACACTCTCCCG‑AGTAGGACAAATCCGCCGGGAGCGGATTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3416750‑3416677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggatttgTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGC > CP009273/3416700‑3416766 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |