| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3416677 = | 202 (0.560) | 12 (0.040) | 6/94 | NT | 6.0% | intergenic (+124/+105) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon |
| ? | CP009273 | 3416700 = | 206 (0.680) | intergenic (+147/+82) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon | |||||
Only 100 of 363 total aligned reads displayed.
GTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGC > CP009273/3416637‑3416766 | tttatctgttgtttgtcggtgaacactctcccgagtaggaCAAATCCGCTCCCGGCGGATTTGTCCt > 1:6735977‑M1/41‑67 (MQ=255) tctgttgtttgtcggtgaacactctcccgaagtaggacaaatccgccgggagcggatttgTCCTACT‑c < 1:14579274‑M2/8‑1 (MQ=255) gCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑Cgg > 1:2214910/1‑68 (MQ=33) ccGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑Cggg < 1:12284458/67‑1 (MQ=35) ccGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑Cggg < 1:18864044/67‑1 (MQ=35) ccGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGga > 1:28256382/1‑68 (MQ=35) ccGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGga > 1:15297167/1‑68 (MQ=35) ccGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGga > 1:12769974/1‑68 (MQ=35) ccGCCACCCTCCGGGCCGTTCCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑Cggg < 1:20041500/67‑1 (MQ=25) cGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGgag < 1:28780349/68‑1 (MQ=35) cGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGgag < 1:14541500/68‑1 (MQ=35) cGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGgag < 1:25924710/68‑1 (MQ=35) gtttgtcggtgaacactctcccgagtaggacaaatccgccgggagcggatttgTCCTACT‑CGGGagag < 1:28543075‑M2/15‑1 (MQ=255) ccACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGagag > 1:10930417/1‑68 (MQ=35) cACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgt < 1:3714402/68‑1 (MQ=37) ccccTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGtgtg > 1:17739679/2‑68 (MQ=255) aCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgtg > 1:1748861/1‑68 (MQ=39) aCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgtg < 1:16076075/68‑1 (MQ=39) aCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgtg > 1:15484781/1‑68 (MQ=39) aCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgtg < 1:23607196/68‑1 (MQ=39) aCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgtg > 1:971586/1‑68 (MQ=39) aCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgtg > 1:13218117/1‑68 (MQ=39) cccTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgtgt < 1:24021602/68‑1 (MQ=40) ccTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgtgt > 1:6898864/1‑67 (MQ=40) tCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTc > 1:27958794/1‑67 (MQ=40) tCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTc > 1:27058517/1‑67 (MQ=40) gggCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCg > 1:14010436/1‑68 (MQ=40) ggCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCg > 1:2512013/1‑67 (MQ=40) ggCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCg > 1:6612941/1‑67 (MQ=40) ggCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCg > 1:12500558/1‑67 (MQ=40) gCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac > 1:15790536/1‑68 (MQ=40) gCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac > 1:18143100/1‑68 (MQ=40) ccGTTGCTTCGCAACGTTCAAATCCGCTCGCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac < 1:11963785/67‑1 (MQ=255) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGaca > 1:19929799/1‑68 (MQ=40) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGaca > 1:10062546/1‑68 (MQ=40) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac < 1:4278461/67‑1 (MQ=40) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac < 1:5350648/67‑1 (MQ=40) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac < 1:26979744/67‑1 (MQ=40) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac < 1:20703797/67‑1 (MQ=40) ccGTTGCTTCGCAACGGTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac < 1:18263659/67‑1 (MQ=255) cGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaa < 1:21695164/68‑1 (MQ=40) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTAGT‑CGGGAGAGTGTTCACCGacaaaca < 1:20085109/68‑1 (MQ=255) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgt < 1:16739588/53‑1 (MQ=38) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaaaca < 1:9105584/68‑1 (MQ=40) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaaaca < 1:23260173/68‑1 (MQ=40) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaaac < 1:7734617/67‑1 (MQ=40) tCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAg < 1:14193758/68‑1 (MQ=40) tCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAg < 1:11675583/68‑1 (MQ=40) tCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAg < 1:6480710/68‑1 (MQ=40) tCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAg < 1:18558951/68‑1 (MQ=40) cGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGa < 1:13148874/68‑1 (MQ=40) gagtaggaCAAATCCGCTCCCGGCGGATTTGTCATACTTCGGGAGAGTGTTCACCGACAAACAACAGa < 1:16893421‑M1/60‑1 (MQ=255) gCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTTCT‑CGGGAGAGTGTTCACCGACAAACAACAGAt > 1:18343197/1‑68 (MQ=255) gCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGAt > 1:7021914/1‑68 (MQ=40) gtaggaCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATaa < 1:25421303‑M1/62‑1 (MQ=255) aaCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATaa > 1:8897924/1‑68 (MQ=40) aaCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATaa > 1:1495958/1‑68 (MQ=40) aaCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATaa > 1:21332352/1‑68 (MQ=40) aaCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATaa > 1:20354155/1‑68 (MQ=40) aaCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATaa > 1:1483803/1‑68 (MQ=40) ttCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACa > 1:28494942/1‑68 (MQ=255) tctAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACa > 1:7493927‑M1/4‑67 (MQ=255) tCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACaa < 1:26127604/68‑1 (MQ=255) AATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAg < 1:3268037‑M1/68‑1 (MQ=255) AATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAg < 1:29574055‑M1/68‑1 (MQ=255) atgcGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGTCAAACAACAGATAAAACAAAAgg < 1:29199980/65‑1 (MQ=255) ATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAgg > 1:7087811‑M1/1‑68 (MQ=255) ATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAg < 1:4477394‑M1/67‑1 (MQ=255) ATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAg < 1:17200841‑M1/67‑1 (MQ=255) TCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAgg < 1:24634946‑M1/67‑1 (MQ=255) TCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAgg < 1:8052874‑M1/67‑1 (MQ=255) TCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAgg < 1:5545507‑M1/67‑1 (MQ=255) TCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGc > 1:4757546‑M1/1‑68 (MQ=255) tCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAg > 1:19568033/1‑67 (MQ=255) tCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAg < 1:22631280/67‑1 (MQ=255) cccGGCTGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCTGTc < 1:22896460/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTTTTCACCGACAAACAACAGATAAAACAAAAGGCTCAGTc < 1:6112420/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:4104415/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:9620594/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:9484849/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:10431677/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:10543874/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:8356775/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:11313547/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:11433081/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:13283799/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:13460554/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:19271215/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:22259602/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:25258239/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:25722130/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:26473964/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:26618096/68‑1 (MQ=255) cccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 1:3531394/68‑1 (MQ=255) ccGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCt < 1:566298/68‑1 (MQ=255) ggatttgTCCTACT‑CGGGAGAGTGTTCACCGTCAAAGAAGAGATAAAACAAAAGGCCCAGTCTTCCg < 1:1438547‑M2/60‑1 (MQ=255) ggatttgTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGa < 1:27581997‑M2/61‑1 (MQ=255) tgTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGCTAAAACAAAAGGCCCAGTCTTCCGACTGAg < 1:10233529‑M2/66‑1 (MQ=255) gTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGc < 1:20994297‑M2/67‑1 (MQ=255) gTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGc < 1:23761119‑M2/67‑1 (MQ=255) | GTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGC > CP009273/3416637‑3416766 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |