| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3416677 = | 202 (0.560) | 12 (0.040) | 6/94 | NT | 6.0% | intergenic (+124/+105) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon |
| ? | CP009273 | 3416700 = | 206 (0.680) | intergenic (+147/+82) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon | |||||
Only 100 of 277 total aligned reads displayed.
TTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAA > CP009273/3416610‑3416743 | tttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTc > 1:22019451/1‑68 (MQ=35)gctcagtcggaagactgggccttttgttttatctgttgtttgtcggtgaacactctcccgagtaggac < 1:9005243‑M1/1‑1 (MQ=255) ttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCa > 1:24207360/1‑68 (MQ=35) ctcagtcggaagactgggccttttgttttatctgttgtttgtcggtgaacactctcccgagtaggaCa < 1:28925927‑M1/2‑1 (MQ=255) ctcagtcggaagactgggccttttgttttatctgttgtttgtcggtgaacactctcccgagtaggaCa < 1:25548597‑M1/2‑1 (MQ=255) tgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaa > 1:24931958/1‑68 (MQ=35) tgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaa > 1:25218519/1‑68 (MQ=35) tgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaa > 1:27541633/1‑68 (MQ=35) gatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa < 1:28714060/68‑1 (MQ=35) cagtcggaagactgggccttttgttttatctgttgtttgtcggtgaacactctcccgagtaggaCaaa > 1:22663467‑M1/65‑68 (MQ=255) tGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt > 1:25968542/1‑67 (MQ=35) tGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt > 1:21330617/1‑67 (MQ=35) tGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt > 1:12249785/1‑67 (MQ=35) tGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt > 1:8432308/1‑67 (MQ=35) tGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt > 1:5270031/1‑67 (MQ=35) tGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt > 1:8027298/1‑67 (MQ=35) tGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt > 1:11180871/1‑67 (MQ=35) tGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt > 1:22157344/1‑67 (MQ=35) tcggaagactgggccttttgttttatctgttgtttgtcggtgaacactctcccgagtaggaCAAATcc < 1:3584071‑M1/7‑1 (MQ=255) gTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc > 1:29184946/1‑68 (MQ=33) gTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc > 1:16603908/1‑68 (MQ=33) gTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc > 1:15990033/1‑68 (MQ=33) ggaagactgggccttttgttttatctgttgtttgtcggtgaacactctcccgagtaggaCAAATCCGc > 1:27061787‑M1/60‑68 (MQ=255) ccGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑Cggg < 1:18864044/67‑1 (MQ=35) ccGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑Cggg < 1:23475710/67‑1 (MQ=35) ccGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGga > 1:28256382/1‑68 (MQ=35) ccGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGga > 1:12769974/1‑68 (MQ=35) ccGCCACCCTCCGGGCCGTTGCTTCGCAACCTTAAAATCCGCTCCCGGCGGATTTGTGCTACT‑CGGga > 1:25859183/1‑68 (MQ=11) cGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGgag < 1:6881286/68‑1 (MQ=35) cGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGgag < 1:14541500/68‑1 (MQ=35) gCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGgaga < 1:19468678/68‑1 (MQ=35) gCCACCCTCCGGGCCGTTGCTTCGCAACGTCCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGgaga > 1:28532160/1‑68 (MQ=255) ccACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGagag > 1:18202556/1‑68 (MQ=35) cACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGagag < 1:10818335/67‑1 (MQ=35) cACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGagag < 1:20478409/67‑1 (MQ=35) cACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgt < 1:889386/68‑1 (MQ=37) cACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgt < 1:13940071/68‑1 (MQ=37) cACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgt < 1:37406/68‑1 (MQ=37) aCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgtg > 1:26774109/1‑68 (MQ=39) aCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgtg > 1:13218117/1‑68 (MQ=39) aCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgtg > 1:1748861/1‑68 (MQ=39) cccTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgtgt < 1:20200821/68‑1 (MQ=40) cccTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgtgt < 1:26359819/68‑1 (MQ=40) ccTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgtgt > 1:7087577/1‑67 (MQ=40) ccTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAgtgt > 1:13328124/1‑67 (MQ=40) ggCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCg > 1:17809585/1‑67 (MQ=40) ggCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCg > 1:2512013/1‑67 (MQ=40) ggCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCg > 1:12500558/1‑67 (MQ=40) ggCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCg > 1:9667303/1‑67 (MQ=40) ggCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCg > 1:6612941/1‑67 (MQ=40) gCCGTTGCTTCGCAACGTTCAAATCCGCTCTCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac > 1:17065181/1‑68 (MQ=255) gCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac > 1:16902314/1‑68 (MQ=40) gCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac > 1:15790536/1‑68 (MQ=40) gCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac > 1:15416143/1‑68 (MQ=40) gCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac > 1:6729586/1‑68 (MQ=40) ccGTTGCTTCGCAACGTTCAAATCCGCTGCCCGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGaca > 1:18870826/1‑68 (MQ=255) ccGTTGCTTCGCAACGTTCAAATCCGCTCGCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac < 1:11963785/67‑1 (MQ=255) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGaca > 1:10062546/1‑68 (MQ=40) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGaca > 1:2243909/1‑68 (MQ=40) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGaca > 1:19893928/1‑68 (MQ=40) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac < 1:13460875/67‑1 (MQ=40) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac < 1:4278461/67‑1 (MQ=40) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac < 1:5497559/67‑1 (MQ=40) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac < 1:26979744/67‑1 (MQ=40) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac < 1:20703797/67‑1 (MQ=40) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac < 1:6059001/67‑1 (MQ=40) ccGTTGCTTCGCAACGGTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGac < 1:18263659/67‑1 (MQ=255) cGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaa < 1:27924429/68‑1 (MQ=40) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTAGT‑CGGGAGAGTGTTCACCGacaaaca < 1:20085109/68‑1 (MQ=255) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaaaca < 1:6981692/68‑1 (MQ=40) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaaaca < 1:4528982/68‑1 (MQ=40) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaaaca < 1:9105584/68‑1 (MQ=40) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaaaca < 1:10190891/68‑1 (MQ=40) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaaaca < 1:10332448/68‑1 (MQ=40) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaaaca < 1:26059435/68‑1 (MQ=40) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaaaca < 1:28354003/68‑1 (MQ=40) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaaaca < 1:23632095/68‑1 (MQ=40) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaaac < 1:18693486/67‑1 (MQ=40) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaaac < 1:9420158/67‑1 (MQ=40) tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaaac < 1:7734617/67‑1 (MQ=40) gCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaaaca > 1:4112824/1‑67 (MQ=40) gCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGacaaaca > 1:3319280/1‑67 (MQ=40) ttCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAacaaca < 1:210835/68‑1 (MQ=40) cccgagtaggaCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAacaaca < 1:239348‑M1/57‑1 (MQ=255) tCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAg < 1:2144332/68‑1 (MQ=40) tCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAg < 1:6480710/68‑1 (MQ=40) tCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAg < 1:11675583/68‑1 (MQ=40) tCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAg < 1:14193758/68‑1 (MQ=40) cGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGa < 1:13038186/68‑1 (MQ=40) gagtaggaCAAATCCGCTCCCGGCGGATTTGTCCTACTTCGGGAGAGTGTTCACCGACAAACAACAGa < 1:14579274‑M1/60‑1 (MQ=255) gCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTTCT‑CGGGAGAGTGTTCACCGACAAACAACAGAt > 1:18343197/1‑68 (MQ=255) gtaggaCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATaa < 1:5601383‑M1/62‑1 (MQ=255) gtaggaCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATaa < 1:2000080‑M1/62‑1 (MQ=255) gtaggaCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATaa < 1:7443962‑M1/62‑1 (MQ=255) aaCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATaa > 1:1483803/1‑68 (MQ=40) aaCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATaa > 1:1495958/1‑68 (MQ=40) cGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATaaaa < 1:15250211/68‑1 (MQ=40) tCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACaa < 1:14287513/68‑1 (MQ=255) tCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACaa < 1:27626999/68‑1 (MQ=255) tCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACa < 1:22988361/67‑1 (MQ=255) | TTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACT‑CGGGAGAGTGTTCACCGACAAACAACAGATAAAACAA > CP009273/3416610‑3416743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |