BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3767664	NA (NA)	5 (0.020)	4/98	NT	NA	noncoding (69/99 nt)	RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	CP009273	= 3767694	NA (NA)	5 (0.020)	4/98	NT	NA	noncoding (99/99 nt)	RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 152 total aligned reads displayed.

CTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3767598‑3767664

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTAG  <  CP009273/3767694‑3767621

CTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGG                                                                           <  1:18711008/68‑1

CTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGG                                                                           <  1:25569798/68‑1

 TGATGCGCTACGCTTATCAGGCCTACAGGATTCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGC                                                                          <  1:1093239/68‑1

    TGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGG                                                                       <  1:9781285/68‑1

    TGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGG                                                                       <  1:16130228/68‑1

    TGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGG                                                                       <  1:20239165/68‑1

    TGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGG                                                                       >  1:14327297/1‑68

    TGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGG                                                                       <  1:20984357/68‑1

    TGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGG                                                                       >  1:22151484/1‑68

    TGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGG                                                                       <  1:13475523/68‑1

    TGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGG                                                                       <  1:27242268/68‑1

    TGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCG                                                                        <  1:17756765/67‑1

    TGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCG                                                                        <  1:16714114/67‑1

    TGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCG                                                                        <  1:2755790/67‑1

    TGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCG                                                                        <  1:3607341/67‑1

    TGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCG                                                                        <  1:15689980/67‑1

    TGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATCTGTTGAATTTGCACGTTCTTGTAGGCCGG                                                                       <  1:21509863/68‑1

    TGCGCTACGCTTATCAGGCCCACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCG                                                                        <  1:24254096/67‑1

     GCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGA                                                                      <  1:3864943/68‑1

     GCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGA                                                                      >  1:23394962/1‑68

     GCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGA                                                                      >  1:18645761/1‑68

     GCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGA                                                                      >  1:8911599/1‑68

     GCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGA                                                                      >  1:7653131/1‑68

     GCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGA                                                                      >  1:20785744/1‑68

     GCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGA                                                                      >  1:26142789/1‑68

     GCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGA                                                                      <  1:22130338/68‑1

     GCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGA                                                                      >  1:10156242/1‑68

     GCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGA                                                                      >  1:24431588/1‑68

     GCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGA                                                                      >  1:12779352/1‑68

     GCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGA                                                                      <  1:12547931/68‑1

     GCGCTACGCTTATCAGGCCTACAGGATGCAGCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGA                                                                      >  1:8349332/1‑68

     GCGCTAAGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGA                                                                      <  1:7864183/68‑1

      CGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGAT                                                                     >  1:25809066/1‑68

       GCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGAT                                                                     <  1:10471198/67‑1

       GCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGAT                                                                     <  1:24909853/67‑1

       GCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGAT                                                                     <  1:22243013/67‑1

                 TCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTTGGCCGGGTGCGGCGTCAGC                                                          >  1:29096065/1‑68

                 TCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATGCGGCGTAAGC                                                          >  1:13080941/1‑68

                      CCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATGGGGGGTAAGCGCCTT                                                     >  1:21503620/1‑68

                                   TCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATGCGGCGTAAGCGCCTTATCCGGCCGACAA                                        >  1:2551258/1‑68

                                     ACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATGCGGCGTAAGCGCCTTATCCGGCCGACAAGA                                      >  1:1595329/1‑68

                                                               GTAGGCCGGATGCGGCGTAAGCGCCTTTTCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGAT             >  1:3824231/1‑67

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGGCTACAAGAACGTGCAAATTCAACAAATTGTGATGCAT         <  1:4253632/67‑1

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACTAGAACGTGCAAATTCAACAAATTGTGATGCAT         <  1:17045480/67‑1

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATC        <  1:6581063/68‑1

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATC        <  1:7378367/68‑1

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCAT         <  1:11925135/67‑1

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCAT         <  1:18242194/67‑1

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCAT         <  1:9100110/67‑1

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCAT         <  1:8999654/67‑1

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCAT         >  1:20777534/1‑67

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCAT         <  1:2965558/67‑1

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCAT         <  1:11636829/67‑1

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCAT         <  1:6187345/67‑1

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCAT         <  1:3696794/67‑1

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCAT         <  1:21259603/67‑1

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCAT         <  1:4392970/67‑1

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCAT         >  1:21385784/1‑67

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCAT         >  1:4867170/1‑67

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCAT         >  1:1375548/1‑67

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCA          <  1:3132228/66‑1

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGC           <  1:28480217/65‑1

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGC           <  1:26894392/65‑1

                                                                   GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGC           <  1:13580311/65‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGGAAATTCAACAAATTGTGATTCATCCT      <  1:21055437/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCACCAAATTGTGATGCATCCT      <  1:4129754/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAGATTGTGATGCATCCT      <  1:1340628/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:14902555/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:4549045/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:568427/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:13782665/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:14192492/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:22697945/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:2029946/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:15301314/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:8465645/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:15419131/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:18423933/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:18061305/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:9398672/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:10316877/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:23067423/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:17326313/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:12642365/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:12992572/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:28841999/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:29621855/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:24933319/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:13358292/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:24237851/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:23896202/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCT      <  1:26711524/68‑1

                                                                     CGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCC       <  1:3108260/67‑1

                                                                        ATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAATTTGTGATGCATCCTGTA   >  1:7962194/1‑68

                                                                        ATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTA   >  1:3367841/1‑68

                                                                        ATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTA   >  1:25553122/1‑68

                                                                        ATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTA   >  1:4938864/1‑68

                                                                        ATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTA   >  1:26001335/1‑68

                                                                        ATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTA   >  1:11653890/1‑68

                                                                         TGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTAG  >  1:533527/1‑68

CTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3767598‑3767664

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACAAGAACGTGCAAATTCAACAAATTGTGATGCATCCTGTAG  <  CP009273/3767694‑3767621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.