| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3767664 | NA (NA) | 5 (0.020) | 4/98 | NT | NA | noncoding (69/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3767694 | NA (NA) | noncoding (99/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 535 total aligned reads displayed.
GATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTAAA > CP009273/3767627‑3767761 | aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:11925135‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:8999654‑M2/67‑1 (MQ=255) aTGCAACACAATTTGTTCAATCTGCACGGTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC > 1:8683682‑M2/1‑67 (MQ=255) gCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCt < 1:21262771/68‑1 (MQ=255) gCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:26894392‑M2/65‑1 (MQ=255) aTCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGAAAAGGCGCTTACGCCGCATCCGGCctac > 1:3824231‑M2/1‑63 (MQ=255) tCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcc < 1:23691391/68‑1 (MQ=255) tCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGc > 1:15872105/1‑67 (MQ=255) tCACAATTTGTTGAATTTGAACGTTCTTTTAGGCCGGATAAGGCGCTTACGCCTCATCCGGCGCTGc > 1:17745097/1‑67 (MQ=21) tCACAATTGGTTGAATTTGCACGTTCTTGAAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcc < 1:22820101/68‑1 (MQ=255) acaATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcc > 1:823244/1‑66 (MQ=255) acaATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcc > 1:17184672/1‑66 (MQ=255) acaATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcc > 1:1648190/1‑66 (MQ=255) aaTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcccc > 1:16745031/1‑66 (MQ=255) aaTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcccc > 1:16106433/1‑66 (MQ=255) aaTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCctc < 1:5684461/68‑1 (MQ=255) aTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCctc > 1:12557373/1‑67 (MQ=255) tttGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCtctc < 1:4738781/68‑1 (MQ=255) tttGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCtctc < 1:28400553/68‑1 (MQ=255) tttGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCtctc < 1:18585815/68‑1 (MQ=255) tttGTTGAATTTGCACGTTCTTATAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCtctc < 1:20086814/68‑1 (MQ=255) ttgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCctct > 1:29821896/1‑66 (MQ=255) ttgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCctct > 1:22322127/1‑66 (MQ=255) ttgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcc < 1:3997315/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGGTAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:18204771/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:926450/68‑1 (MQ=255) gttgATTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcctc < 1:6154479/68‑1 (MQ=255) gttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcctc < 1:25466146/68‑1 (MQ=255) tgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCa < 1:7587340/67‑1 (MQ=255) tgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCa < 1:11460248/67‑1 (MQ=255) gAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACg < 1:5224781/68‑1 (MQ=255) aTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGga < 1:26694390/68‑1 (MQ=255) aTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGga < 1:10706104/68‑1 (MQ=255) aTTTGCACGTGCTTGTCGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGga < 1:7364246/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:9473145/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:14559588/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:23480279/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:24997679/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:25671800/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:25988964/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:29215719/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:12204989/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:1391665/68‑1 (MQ=255) cACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAggg > 1:19816611/1‑68 (MQ=255) ttCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTg > 1:2740452/1‑68 (MQ=255) ttCTTGTAGGCCGGATAAGGCGCTTACGCCGCATACGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTg > 1:1495882/1‑68 (MQ=255) tCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTgg < 1:1248157/68‑1 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:27814848/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:17880333/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:18366075/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg < 1:24787805/68‑1 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:15378387/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg < 1:11014749/68‑1 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:28486411/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:13297466/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:7681761/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:3444463/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCAGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:11245569/1‑68 (MQ=255) gCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGa > 1:25221573/1‑68 (MQ=255) gCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGa > 1:15600632/1‑68 (MQ=255) aTAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAg < 1:13037838/67‑1 (MQ=255) aTAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAg < 1:4408933/67‑1 (MQ=255) tAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGcc < 1:3652415/68‑1 (MQ=255) tAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGc < 1:21843239/67‑1 (MQ=255) gcgcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCcaca > 1:18941125/1‑67 (MQ=255) gcgcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCa > 1:12775462/1‑67 (MQ=255) gcgcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCa > 1:4960330/1‑67 (MQ=255) gcgcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCa > 1:28939680/1‑67 (MQ=255) cgcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCa < 1:26469595/66‑1 (MQ=255) cgcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCa < 1:548185/66‑1 (MQ=255) cgcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCa < 1:20700330/66‑1 (MQ=255) cgcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCAc < 1:26810212/67‑1 (MQ=255) cgcTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGACTCAc > 1:24585569/1‑67 (MQ=255) aCGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAg > 1:1623480/1‑67 (MQ=255) gccgcATCCGGCGCTGCCCCTCTCCTCACGGAGAGTGTTTGGGTGAGGGAAAAGCCTCACCCCAGccc < 1:19546238/68‑1 (MQ=255) gccgcATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGccc > 1:2035047/1‑68 (MQ=255) gccgcATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGccc < 1:28147526/68‑1 (MQ=255) gccgcATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGccc < 1:27175354/68‑1 (MQ=255) gccgcATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGc > 1:15690198/1‑66 (MQ=255) gccgcATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGc > 1:19249772/1‑66 (MQ=255) cgcATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCct < 1:6717563/67‑1 (MQ=255) aTCCGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcgtagc < 1:10471198‑M2/67‑61 (MQ=255) aTCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCg < 1:6525588/68‑1 (MQ=255) tCCGGCctacaagaacgtgcaaattcaacaaattgtgctgcatcctgtaggcctgataagcgtagcgc > 1:8349332‑M2/1‑6 (MQ=255) tCCGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcttagcgc < 1:7864183‑M2/68‑63 (MQ=255) tCCGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcgtagcgc > 1:23394962‑M2/1‑6 (MQ=255) tCCGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcgtagcgc > 1:10156242‑M2/1‑6 (MQ=255) tCCGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcgtagcgc > 1:21466276‑M2/1‑6 (MQ=255) tCCGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcgtagcgc > 1:20979200‑M2/1‑6 (MQ=255) ccGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcgtagcgca > 1:22151484‑M2/1‑5 (MQ=255) ccGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcgtagcgca > 1:14327297‑M2/1‑5 (MQ=255) ccGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcgtagcgca < 1:13475523‑M2/68‑64 (MQ=255) ccGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcgtagcgca < 1:9781285‑M2/68‑64 (MQ=255) ccGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCggg < 1:28778985/68‑1 (MQ=255) ccGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCggg > 1:21523414/1‑68 (MQ=255) ccGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCggg < 1:11733776/68‑1 (MQ=255) cGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtgggcctgataagcgtagcgca < 1:24254096‑M2/67‑64 (MQ=255) cGGCctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcgtagcgca < 1:24080010‑M2/67‑64 (MQ=255) ggCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTa < 1:17390429/68‑1 (MQ=255) cctacaagaacgtgcaaattcaacaaattgtgatgcatcctgtaggcctgataagcgtagcgcatcag < 1:18711008‑M2/68‑68 (MQ=255) | GATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTAAA > CP009273/3767627‑3767761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |