| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3767664 | NA (NA) | 5 (0.020) | 4/98 | NT | NA | noncoding (69/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3767694 | NA (NA) | noncoding (99/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 518 total aligned reads displayed.
CTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGG > CP009273/3767598‑3767730 | cTGGTGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAg > 1:6185449/1‑67 (MQ=255)cTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAg > 1:6517487/1‑67 (MQ=255)cTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAg > 1:246875/1‑67 (MQ=255) aTGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccg > 1:15697063‑M1/1‑64 (MQ=255) tGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccgg < 1:9781285‑M1/68‑6 (MQ=255) tGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccgg < 1:28775853‑M1/68‑6 (MQ=255) gcgcTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccgga > 1:8911599‑M1/1‑62 (MQ=255) gcgcTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccgga > 1:21466276‑M1/1‑62 (MQ=255) gcgcTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccgga > 1:26142789‑M1/1‑62 (MQ=255) gcgcTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccgga > 1:12562877‑M1/1‑62 (MQ=255) gcgcTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccgga < 1:22130338‑M1/68‑7 (MQ=255) gcTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccggat < 1:10471198‑M1/67‑8 (MQ=255) gcTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTCGCACGTTCTTGTAGgccggat < 1:4391717‑M1/67‑8 (MQ=255) tACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAg > 1:14947093/1‑68 (MQ=255) aCGCTTATCAGGCCTACAGGATGCATCACTATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAgg < 1:27014214/68‑1 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgc > 1:24803572/1‑67 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgc > 1:28189920/1‑67 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgc > 1:10327039/1‑67 (MQ=255) cTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgc > 1:10984577/1‑66 (MQ=255) ttATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCt < 1:12825988/68‑1 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:12097860/1‑68 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:19571866/1‑68 (MQ=255) cAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:27677560/1‑67 (MQ=255) ggCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgcc > 1:2667728/1‑68 (MQ=255) ggCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgcc > 1:11644945/1‑68 (MQ=255) ggCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgcc > 1:7481151/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc > 1:9534979/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc > 1:29692311/1‑68 (MQ=255) cTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc < 1:10154173/67‑1 (MQ=255) tACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCAT > 1:4938864‑M2/1‑68 (MQ=255) tACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCAT > 1:3225384‑M2/1‑68 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:13358292‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:598403‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:13782665‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:12992572‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:2029946‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:357448‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:9090624‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:15301314‑M2/68‑1 (MQ=255) aGGATGAATCACAATTTGTTGAATTTCCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:21055437‑M2/68‑1 (MQ=255) ggATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:399228‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:26847217‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC > 1:20777534‑M2/1‑67 (MQ=255) tGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGCCCGGATAAGGCGCTTACGCCGCATCCGGCct > 1:18755792‑M2/1‑66 (MQ=255) gCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCt < 1:21660971/68‑1 (MQ=255) gCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:28480217‑M2/65‑1 (MQ=255) aTCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGc < 1:23994978/68‑1 (MQ=255) acaATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcccc < 1:16078749/68‑1 (MQ=255) acaATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcccc < 1:8339419/68‑1 (MQ=255) acaATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcc > 1:22524904/1‑66 (MQ=255) acaATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcc > 1:17184672/1‑66 (MQ=255) acaATTTGTTGAAATTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcccc < 1:6740409/68‑1 (MQ=255) aaTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcccc > 1:16745031/1‑66 (MQ=255) aaTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCctc < 1:29301025/68‑1 (MQ=255) aTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCctct < 1:11780205/68‑1 (MQ=255) aTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCctc > 1:24241249/1‑67 (MQ=255) tttGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCtctc < 1:7367041/68‑1 (MQ=255) tttGTGTAATTTGCACGATCTTGTAGCCCGGATATGGCGCTTACGCCTCATCCGGCGCTGCCCCtctc < 1:1557659/68‑1 (MQ=18) ttagttcAATTTGCACGTCCTTGTAGCCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCtctc < 1:23251531/65‑1 (MQ=21) ttgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCctct > 1:21329900/1‑66 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:23485632/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:24375375/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:926450/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:18717416/68‑1 (MQ=255) ttgAATTTGCACGGTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGAGCTGCCCCTctactc > 1:1833898/1‑67 (MQ=18) ttaaTTTGCTCGTTCTTGTAGGGCGGAAAAGGCTCTTACGCCGAATCCGGCGCTGCCCCTCTCCTCa < 1:10887473/65‑1 (MQ=37) tgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCa < 1:11460248/67‑1 (MQ=255) tgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCa < 1:25987114/67‑1 (MQ=255) tgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCa < 1:7674631/67‑1 (MQ=255) gAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACg < 1:22891633/68‑1 (MQ=255) gAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACg < 1:222355/68‑1 (MQ=255) aaattGCTCGTTCTTCTAGGCCGGATAAGTCGCTTTCGCCGCTTCGGGCGCTGCCCCTCTCCTCACg < 1:20199363/64‑1 (MQ=25) aaTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACgg > 1:5355765/1‑68 (MQ=255) aTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACgg < 1:12304359/67‑1 (MQ=255) aTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACgg < 1:3656151/67‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:7854863/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:4593884/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:8591834/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:25671800/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:13461250/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:14287172/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:17665389/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:19308342/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:24997679/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:14559588/68‑1 (MQ=255) cACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAggg > 1:19816611/1‑68 (MQ=255) aCGTTCTTGTCGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGt < 1:7976166/68‑1 (MQ=255) aCGTTCTTGTAGGCGGGTAAAGGGGGTTACGCCGCTTCCGGCGCTGCCCCTCTCCTCACGGAGAGGGt < 1:25343351/68‑1 (MQ=255) aCGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGt < 1:5631457/68‑1 (MQ=255) aCGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGt < 1:18142277/68‑1 (MQ=255) aCGTTCTTGTACGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGt < 1:16344979/68‑1 (MQ=255) cGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGtt > 1:2052191/1‑68 (MQ=255) ttCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTg > 1:2740452/1‑68 (MQ=255) tCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTgg > 1:18533361/1‑68 (MQ=255) tCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTgg > 1:5172599/1‑68 (MQ=255) ttGTCGGCCGGATAAGGCGCTTACGCCGCATCCGGCctacaagaacgtgcaaattcaacaaattgtga > 1:2551258‑M2/1‑36 (MQ=255) gTAGgccggatgcggcgtaagcgccttttccggcctacaagaacgtgcaaattcaacaaattgtgat > 1:3824231‑M1/1‑4 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:17880333/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:29052999/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCAGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:11245569/1‑68 (MQ=255) | CTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGG > CP009273/3767598‑3767730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |