New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3999175 =	306 (0.850)	19 (0.060)	10/96	NT	7.0%	intergenic (+84/‑49)	pldA/recQ	outer membrane phospholipase A/ATP‑dependent DNA helicase
	?	CP009273	3999197 =	245 (0.790)					intergenic (+106/‑27)	pldA/recQ	outer membrane phospholipase A/ATP‑dependent DNA helicase

AGATTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3999249‑3999175 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTA  >  CP009273/3999197‑3999263                                                                                                                                                AGATTCAACACTTCCGCCTGCGCCACATTCACCCCGAGTGCCTGAAATAAAAACAGGCGCTATTTTCA                                                                            >  1:597969/1‑68   ATTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC                                                                          >  1:26987537/1‑68   ATTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC                                                                          >  1:26953712/1‑68    TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC                                                                          >  1:10352210/1‑67    TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC                                                                          >  1:21017636/1‑67    TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC                                                                          >  1:21554415/1‑67    TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC                                                                          >  1:19474349/1‑67    TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC                                                                          >  1:1772570/1‑67    TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC                                                                          >  1:22350994/1‑67    TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC                                                                          >  1:25886482/1‑67    TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC                                                                          >  1:14741123/1‑67    TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC                                                                          >  1:12933755/1‑67    TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC                                                                          >  1:28784375/1‑67    TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC                                                                          >  1:29830959/1‑67    TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC                                                                          >  1:8160627/1‑67    TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC                                                                          >  1:9319639/1‑67    TTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGC                                                                          >  1:9842789/1‑67      CAACACTTCCGCCTGCGCCACTTTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCG                                                                         >  1:19095898/1‑66      CAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCG                                                                         >  1:21942634/1‑66       AACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCT                                                                      <  1:26221306/68‑1        ACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCT                                                                      >  1:361231/1‑67        ACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCT                                                                      >  1:17596203/1‑67         CACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGT                                                                    <  1:7638040/68‑1               CGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTAT                                                              <  1:355462/68‑1               CGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTAT                                                              <  1:3243672/68‑1                    GCGCCACATTCACCCCGCTTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAG                                                         <  1:29320332/68‑1                      GCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGG                                                        <  1:7438831/67‑1                      GCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGG                                                        <  1:2967337/67‑1                        CACATTCACCCCGATTGCCTGAAATAAAAACCGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCA                                                      <  1:23382251/67‑1                         ACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAAT                                                    <  1:7647975/68‑1                             TCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGG                                                <  1:1393849/68‑1                             TCACCCCGATTCCCTGAAAAAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGG                                                <  1:28710424/68‑1                              CACCCCGATTGCCTGAAATAAAACCAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGGG                                               <  1:26265740/68‑1                              CACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGGG                                               <  1:8812551/68‑1                              CACCCCGATTGCCTGAAATAAAAACAGGCGCTATATTCAGCGCCTGTTTTTATTTCAGGCAATCGGGG                                               <  1:10536120/68‑1                              CACCCCGATTGCCAGAAATAAAAACAGGCGCTATTTTCACCGCCTGTTTTTATTTCAGGCAATCGGGG                                               <  1:8844859/68‑1                              CACCCCGATGGCCTGAAATAACCACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGGG                                               <  1:8844866/68‑1                                  CCGATTGCCTGAAATAAAACCAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAA                                           <  1:22685669/68‑1                                  CCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAA                                           <  1:533189/68‑1                                            GAAAAAAAACCAGGCGCTATTTTCCGCGCCTGTTTTTATTGCAGGCAATCGGGGTGAATGTGGCGCAG                                 <  1:11624161/68‑1                                                           GCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAA                   <  1:1989436/67‑1                                                           GCTATTTTCAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAA                   <  1:1954595/67‑1                                                                     GCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCG        >  1:18780480/1‑68                                                                     GCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCG        >  1:710629/1‑68                                                                     GCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCG        >  1:5382645/1‑68                                                                     GCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCG        >  1:22368930/1‑68                                                                     GCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCG        >  1:307967/1‑68                                                                       GCCTGTTTTTATTTCAGGCAATGGGGGTGAATGTGGCTCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      <  1:24180380/68‑1                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGACTGTGGCGCAGGCGGAAGGGTTGAATCTGGAGTCCGGA      <  1:8711623/68‑1                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      >  1:11190580/1‑68                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      >  1:1684771/1‑68                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      >  1:9690856/1‑68                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      >  1:1081876/1‑68                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      <  1:26074096/68‑1                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      <  1:2612682/68‑1                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      <  1:20809285/68‑1                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      <  1:8211927/68‑1                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      >  1:11151960/1‑68                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      >  1:24750624/1‑68                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      >  1:21664734/1‑68                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      >  1:7365509/1‑68                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      <  1:2201484/68‑1                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      <  1:29467514/68‑1                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      <  1:2902591/68‑1                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      >  1:23828078/1‑68                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      <  1:3345593/68‑1                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      <  1:3468494/68‑1                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      >  1:5173551/1‑68                                                                       GCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      <  1:1307522/68‑1                                                                       GCCTGTTTTTATTTCAGGCAATAGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      >  1:3789085/1‑68                                                                       GCCTGTTCTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      <  1:11895506/68‑1                                                                        CCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGA      >  1:27739142/1‑67                                                                         CTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGC    <  1:8809188/68‑1                                                                         CTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGC    <  1:23050400/68‑1                                                                         CTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAG     <  1:1971197/67‑1                                                                          TGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCT   <  1:25004431/68‑1                                                                          TGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCT   <  1:13805160/68‑1                                                                           GTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTA  <  1:4644068/68‑1                                                                                                                                                AGATTCAACACTTCCGCCTGCGCCACATTCACCCCGATTGCCTGAAATAAAAACAGGCGCTATTTTCAGCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3999249‑3999175 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTA  >  CP009273/3999197‑3999263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.