New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3999175 =306 (0.850)19 (0.060) 10/96 NT 7.0% intergenic (+84/‑49) pldA/recQ outer membrane phospholipase A/ATP‑dependent DNA helicase
?CP009273 3999197 = 245 (0.790)intergenic (+106/‑27) pldA/recQ outer membrane phospholipase A/ATP‑dependent DNA helicase

Only 100 of 402 total aligned reads displayed.

GGCAAATCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTG  >  CP009273/3999109‑3999241
                                                                  |                                                                  
agctccggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCa                                                                   <  1:13805160‑M1/2‑1 (MQ=255)
 gctccggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCAg                                                                  <  1:8809188‑M1/3‑1 (MQ=255)
   tccggactccagattcaacacttccgcctgcgccacattcacccctattgcctgaaataaaaaCAGgc                                                                >  1:3789085‑M1/64‑68 (MQ=255)
   tccggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCAGgc                                                                >  1:21664734‑M1/64‑68 (MQ=255)
   tccggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCAGgc                                                                <  1:2201484‑M1/5‑1 (MQ=255)
   tccggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCAGgc                                                                >  1:24750624‑M1/64‑68 (MQ=255)
   tccggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCAGgc                                                                <  1:2612682‑M1/5‑1 (MQ=255)
   tccggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCAGgc                                                                <  1:8211927‑M1/5‑1 (MQ=255)
   tccggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCAGgc                                                                >  1:1684771‑M1/64‑68 (MQ=255)
   tccggactccagattcaacacttccgcctgagccacattcacccccattgcctgaaataaaaaCAGgc                                                                <  1:24180380‑M1/5‑1 (MQ=255)
   aaaTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAgg                                                                 <  1:25448949/67‑1 (MQ=255)
   aaaTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAgg                                                                 <  1:8671236/67‑1 (MQ=255)
   aaaTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGgc                                                                <  1:10669815/68‑1 (MQ=255)
    aaTCTGGAATCCAGCATCCAGGATTACCCTGTCAGAGACTAAAAGAATTGCAGTTTCTCGCGCAGgc                                                                >  1:16521196/1‑67 (MQ=255)
    aaTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAgcc                                                                >  1:7490940/1‑65 (MQ=255)
     cggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCAGgcgc                                                              >  1:22368930‑M1/62‑68 (MQ=255)
     aTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGgcgc                                                              <  1:724616/68‑1 (MQ=255)
     aTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGgcgc                                                              <  1:17446016/68‑1 (MQ=255)
     aTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGgcgc                                                              <  1:2135487/68‑1 (MQ=255)
       cTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTg                                                            <  1:11531388/68‑1 (MQ=255)
        tGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGa                                                           <  1:20729560/68‑1 (MQ=255)
         ggAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGaa                                                          <  1:13278913/68‑1 (MQ=255)
           aaTCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGaaa                                                         <  1:50987/67‑1 (MQ=255)
            aTCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAAt                                                       >  1:28712649/1‑68 (MQ=255)
            aTCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAAt                                                       >  1:4394049/1‑68 (MQ=255)
            aTCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAAt                                                       >  1:1289218/1‑68 (MQ=255)
                   aTCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTTGCGCAGGCGCTGAAAATAgcg                                                   <  1:29139853/65‑1 (MQ=255)
                   aTCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAgcg                                                   <  1:2833545/65‑1 (MQ=255)
                     ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                              <  1:13637263/68‑1 (MQ=255)
                      cAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGtt                                             <  1:464740/68‑1 (MQ=255)
                        ggATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGtttt                                           >  1:4857404/1‑68 (MQ=255)
                          aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGttt                                            <  1:1122000/65‑1 (MQ=255)
                          aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:15947832/1‑68 (MQ=255)
                          aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:9036253/1‑68 (MQ=255)
                          aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:20513872/1‑68 (MQ=255)
                          aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:20835632/1‑68 (MQ=255)
                          aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:24464103/1‑68 (MQ=255)
                          aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:8441803/1‑68 (MQ=255)
                          aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:27206698/1‑68 (MQ=255)
                          aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:1447082/1‑68 (MQ=255)
                          aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:16415391/1‑68 (MQ=255)
                          aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTATTTa                                         >  1:24835116/1‑68 (MQ=255)
                          aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCACGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                         >  1:19525412/1‑68 (MQ=255)
                               ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                    >  1:29779179/1‑68 (MQ=255)
                               ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                    >  1:19884384/1‑68 (MQ=255)
                               ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                    >  1:11721135/1‑68 (MQ=255)
                               ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                    >  1:18242679/1‑68 (MQ=255)
                                 tctcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAgg                                  <  1:12280528/68‑1 (MQ=255)
                                 tctcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAgg                                  <  1:7769411/68‑1 (MQ=255)
                                 tctcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAg                                   >  1:28020935/1‑67 (MQ=255)
                                  ctcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAgga                                 <  1:202495/68‑2 (MQ=255)
                                   tcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCa                                <  1:14725204/68‑1 (MQ=255)
                                   tcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCa                                <  1:23672532/68‑1 (MQ=255)
                                     agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                               >  1:10001036/1‑67 (MQ=255)
                                     agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                               >  1:14293677/1‑67 (MQ=255)
                                     agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                               >  1:18786448/1‑67 (MQ=255)
                                     agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                               >  1:18659020/1‑67 (MQ=255)
                                     agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                               >  1:5412330/1‑67 (MQ=255)
                                       agaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCg                            >  1:17953704/1‑68 (MQ=255)
                                        gaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAAGCAAt                              <  1:12015992/65‑1 (MQ=255)
                                         aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                          >  1:6995401/1‑68 (MQ=255)
                                         aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                          >  1:7167718/1‑68 (MQ=255)
                                         aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                          >  1:6314297/1‑68 (MQ=255)
                                         aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                          >  1:25671927/1‑68 (MQ=255)
                                          cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                          <  1:15065594/67‑1 (MQ=255)
                                          cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                          <  1:23089311/67‑1 (MQ=255)
                                          cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                          <  1:2627884/67‑1 (MQ=255)
                                          cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                          <  1:4125146/67‑1 (MQ=255)
                                          cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                          <  1:3098023/67‑1 (MQ=255)
                                          cTAAAAGCATTGCAGTTTCTCGCGCAGGCGATGAAAATAGCGCCTGTTTTTATTTCAGGCAATCgg                           <  1:27543420/66‑1 (MQ=255)
                                            ccccgattgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTGGTTATTTCAGGCCATCGGGGTg                       <  1:8844866‑M1/46‑1 (MQ=255)
                                             cccgattgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGa                      <  1:1393849‑M1/47‑1 (MQ=255)
                                             aaaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGa                      <  1:28840092/68‑1 (MQ=255)
                                             aaaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGa                      <  1:29389021/68‑1 (MQ=255)
                                              aaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGaa                     <  1:17727141/68‑1 (MQ=255)
                                              aaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGaa                     <  1:19614572/68‑1 (MQ=255)
                                               aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                    >  1:9542635/1‑68 (MQ=255)
                                               aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                    >  1:11097673/1‑68 (MQ=255)
                                               aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                    >  1:20034995/1‑68 (MQ=255)
                                               aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                    >  1:1965972/1‑68 (MQ=255)
                                               aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGCGGTGAAt                    >  1:16982180/1‑68 (MQ=255)
                                                gCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtg                   >  1:26527394/1‑68 (MQ=255)
                                                 cATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtgt                  >  1:21231590/1‑68 (MQ=255)
                                                 cATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtgt                  >  1:19100682/1‑68 (MQ=255)
                                                   tgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCGGTTTTTATTTCAGGCAATCGGGGTGAAtgtg                 <  1:23382251‑M1/52‑1 (MQ=255)
                                                     cctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGgc               <  1:2967337‑M1/54‑1 (MQ=255)
                                                       aGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGgcgc             <  1:17287080/67‑1 (MQ=255)
                                                       aGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCa            >  1:26766154/1‑68 (MQ=255)
                                                          ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAgg          <  1:16085715/67‑1 (MQ=255)
                                                          ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAgg          <  1:5314513/67‑1 (MQ=255)
                                                          ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAg           <  1:3343652/66‑1 (MQ=255)
                                                          ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAg           <  1:25024185/66‑1 (MQ=255)
                                                           ataaaaaCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCg        <  1:355462‑M1/61‑1 (MQ=255)
                                                            ctcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCgg       >  1:10449110/1‑68 (MQ=255)
                                                             tcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGa      <  1:15657869/68‑1 (MQ=255)
                                                             tcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGa      <  1:12566559/68‑1 (MQ=255)
                                                                 gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtg  <  1:22748656/68‑1 (MQ=255)
                                                                 gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgt   <  1:18533763/67‑1 (MQ=255)
                                                                 gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgt   <  1:28571248/67‑1 (MQ=255)
                                                                 aCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtg  <  1:7638040‑M1/67‑1 (MQ=255)
                                                                  |                                                                  
GGCAAATCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTG  >  CP009273/3999109‑3999241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.