New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3999175 =306 (0.850)19 (0.060) 10/96 NT 7.0% intergenic (+84/‑49) pldA/recQ outer membrane phospholipase A/ATP‑dependent DNA helicase
?CP009273 3999197 = 245 (0.790)intergenic (+106/‑27) pldA/recQ outer membrane phospholipase A/ATP‑dependent DNA helicase

Only 100 of 404 total aligned reads displayed.

CCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTA  >  CP009273/3999130‑3999263
                                                                   |                                                                  
ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                                                    <  1:18614454/68‑1 (MQ=255)
ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                                                    <  1:13637263/68‑1 (MQ=255)
ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                                                    <  1:7572511/68‑1 (MQ=255)
 cAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGTCTGtt                                                                   <  1:21470424/68‑1 (MQ=255)
 cAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGtt                                                                   <  1:8344657/68‑1 (MQ=255)
 cAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGtt                                                                   <  1:3315424/68‑1 (MQ=255)
 cAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGtt                                                                   <  1:15595593/68‑1 (MQ=255)
   ggATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGtttt                                                                 >  1:27313070/1‑68 (MQ=255)
   ggATTACCCTCTCAGAGACTAAAACCATTGAAGTTTCTCCCGCAGGCGCTGAAAATAGCGCCTGtttt                                                                 >  1:25101883/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                               >  1:815545/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                               >  1:3770625/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                               >  1:3882438/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                               >  1:13173821/1‑68 (MQ=255)
     aTTACACTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCAGAAAATAGAGACTGttatta                                                               >  1:20665446/1‑68 (MQ=255)
         ctgcgccacattcaccccgattgcctgcaataaaaaCAGGCGCGGAAAATAGCGCCTGGTTTTTTTTc                                                           <  1:11624161‑M1/32‑1 (MQ=255)
          ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                                          >  1:14571765/1‑68 (MQ=255)
          ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                                          >  1:11721135/1‑68 (MQ=255)
           gcgccacattcaccccgcttgcctgaaataaaaacaggcgctattttcagcgcctgTTTTTATTTCAg                                                         <  1:29320332‑M2/12‑1 (MQ=255)
            tctcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAgg                                                        <  1:7769411/68‑1 (MQ=255)
            tctcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAg                                                         >  1:2176472/1‑67 (MQ=255)
            tctcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAg                                                         >  1:1646619/1‑67 (MQ=255)
             gccacattcaccccgattgcctgaaataaaaacaggcgctattttcagcgcctgTTTTTATTTCAgg                                                        <  1:7438831‑M2/13‑1 (MQ=255)
              tcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCa                                                      <  1:14725204/68‑1 (MQ=255)
              tcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCa                                                      <  1:1606675/68‑1 (MQ=255)
              tcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCa                                                      >  1:19071716/1‑68 (MQ=255)
               cacattcaccccgattgcctgaaataaaaaccggcgctattttcagcgcctgTTTTTATTTCAGGCa                                                      <  1:23382251‑M2/15‑1 (MQ=255)
                agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                                                     >  1:14293677/1‑67 (MQ=255)
                agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                                                     >  1:19639340/1‑67 (MQ=255)
                agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                                                     >  1:10001036/1‑67 (MQ=255)
                acattcaccccgattgcctgaaataaaaacaggcgctattttcagcgcctgTTTTTATTTCAGGCAAt                                                    <  1:7647975‑M2/17‑1 (MQ=255)
                  agaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCg                                                  >  1:17953704/1‑68 (MQ=255)
                   ttcaccccgattgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGGTTTTATTTCAGGCAATCgg                                                 <  1:22685669‑M1/42‑1 (MQ=255)
                   gaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAAt                                                    <  1:12391471/65‑1 (MQ=255)
                   gaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCg                                                  <  1:16702786/67‑1 (MQ=255)
                    tcaccccgattgcctgaaataaaaacaggcgctattttcagcgcctgTTTTTATTTCAGGCAATCggg                                                <  1:1393849‑M2/21‑1 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                >  1:14997040/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                >  1:24922077/1‑68 (MQ=255)
                     caccccgattgcctgaaataaaaccaggcgctattttcagcgcctgTTTTTATTTCAGGCAATCgggg                                               <  1:26265740‑M2/22‑1 (MQ=255)
                     caccccgattgcctgaaataaaaacaggcgctatattcagcgcctgTTTTTATTTCAGGCAATCgggg                                               <  1:10536120‑M2/22‑1 (MQ=255)
                     caccccgatggcctgaaataaccacaggcgctattttcagcgcctgTTTTTATTTCAGGCAATCgggg                                               <  1:8844866‑M2/22‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTGTCGCGCAGTCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggt                                                <  1:28818608/67‑2 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCgggg                                               <  1:2296246/68‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                <  1:881954/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                <  1:5014431/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                <  1:24380764/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                <  1:7182595/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                <  1:18252796/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                <  1:23089311/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCgg                                                 <  1:16877479/66‑1 (MQ=255)
                        aaaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGa                                            <  1:29677131/68‑1 (MQ=255)
                         aaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGaa                                           <  1:17648096/68‑1 (MQ=255)
                         aaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGaa                                           <  1:9154217/68‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                          <  1:22069915/68‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                          <  1:27898595/68‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                          >  1:9542635/1‑68 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                          <  1:20330319/68‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                          >  1:4763312/1‑68 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                          >  1:16201044/1‑68 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                          <  1:21105375/68‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                          >  1:24646698/1‑68 (MQ=255)
                           gCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtg                                         >  1:25816541/1‑68 (MQ=255)
                           gCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtg                                         >  1:26527394/1‑68 (MQ=255)
                                  aGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGgcgc                                   <  1:17287080/67‑1 (MQ=255)
                                  aGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCa                                  >  1:26766154/1‑68 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAgg                                <  1:19929151/67‑1 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAgg                                <  1:11015145/67‑1 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAgg                                <  1:5314513/67‑1 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGc                               >  1:11193191/1‑68 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGc                               <  1:28600057/68‑1 (MQ=255)
                                      ataaaaaCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCg                              <  1:355462‑M1/61‑1 (MQ=255)
                                       ctcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCgg                             >  1:10449110/1‑68 (MQ=255)
                                          gcgcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAg                          >  1:4572567/1‑68 (MQ=255)
                                          gcgcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAg                          <  1:5461325/68‑1 (MQ=255)
                                            gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtg                        <  1:12835331/68‑1 (MQ=255)
                                            gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtg                        >  1:28360487/1‑68 (MQ=255)
                                            gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgt                         <  1:19430947/67‑1 (MQ=255)
                                                  gctattttcagcgcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGaa                   <  1:1954595‑M2/50‑1 (MQ=255)
                                                  GCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGaa                   >  1:29830959‑M1/1‑67 (MQ=255)
                                                  GCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGaa                   >  1:22350994‑M1/1‑67 (MQ=255)
                                                  GCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAAt                  >  1:26987537‑M1/1‑68 (MQ=255)
                                                       aaaTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTgg              <  1:24049714/67‑1 (MQ=255)
                                                        aaTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAg            >  1:15866067/1‑68 (MQ=255)
                                                        aaTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAg            >  1:8617199/1‑68 (MQ=255)
                                                        aaTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAg            >  1:25455193/1‑68 (MQ=255)
                                                         aTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAg            >  1:12032749/1‑67 (MQ=255)
                                                         aTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAg            >  1:6326003/1‑67 (MQ=255)
                                                         aTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAg            >  1:2478250/1‑67 (MQ=255)
                                                         aTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGt           <  1:20132599/68‑1 (MQ=255)
                                                         aTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGt           <  1:1986480/68‑1 (MQ=255)
                                                         aTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGt           <  1:4335959/68‑1 (MQ=255)
                                                            gcgcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCg        >  1:710629‑M2/8‑68 (MQ=255)
                                                            gcgcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCg        >  1:5382645‑M2/8‑68 (MQ=255)
                                                            gcgcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCg        >  1:18780480‑M2/8‑68 (MQ=255)
                                                            gcgcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCg        >  1:307967‑M2/8‑68 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa      <  1:20809285‑M2/63‑1 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa      <  1:2612682‑M2/63‑1 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa      <  1:2902591‑M2/63‑1 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa      <  1:29467514‑M2/63‑1 (MQ=255)
                                                                ctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGc    <  1:8809188‑M2/65‑1 (MQ=255)
                                                                 tgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCt   <  1:13805160‑M2/66‑1 (MQ=255)
                                                                   |                                                                  
CCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTA  >  CP009273/3999130‑3999263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.