| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4386424 | 198 (0.550) | 12 (0.040) | 10/96 | NT | 6.7% | coding (543/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II |
| ? | CP009273 | = 4386471 | 164 (0.530) | coding (590/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II | |||||
GCGCAATCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4386352‑4386424‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccggcaTCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTAT < CP009273/4386471‑4386405 GCGCAATCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGT < 1:26309840/67‑1GCGCAATCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGT < 1:5025789/67‑1GCGCAATCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGT < 1:8913070/67‑1GCGCAATCCGTTTAAAACGGAAAGAAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGT < 1:5909884/67‑1 GCAATCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCG > 1:19320932/1‑68 AATCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGC > 1:22258122/1‑68 ATCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCA > 1:5745712/1‑68 ACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATTCGGTAACGCGTCCGGCATCAATAGCGAT > 1:2260770/1‑68 ACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCTTCAATAGCGAT > 1:28417688/1‑68 CACTACGGGTGTTATCAGCCGTAATTCGGTAACGCGTCCGGCATCAATAGCGCTGATAATTTTATCG > 1:21171702/1‑67 GGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTT > 1:14022365/1‑68 TTATCAGCAGTAATACGGTAACGCGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCC > 1:23060674/1‑68 GCAGTAATACGGTAACGCGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGC > 1:14500253/1‑67 AGTAATACGGTAACGCGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGC > 1:23880057/1‑67 AATACGGTAACGCGTCCGGCATCAATAGCGTGGATAATTTTATAGCCAGGGTTAGCCGTCGCGCGa > 1:20842512/1‑65 AATACGGTAACGCGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGC > 1:20875875/1‑66 TACGGTAACGCGTCCGGCATCAATAGCGATGATAATCTTATCGCCAGTGTTAGCCGTCGCGCGCGCT > 1:10405791/1‑67 GGTAACGCGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCG > 1:21109841/1‑68 GTAACGCGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGG > 1:12369278/1‑68 ggGTCCGGCATCAATAGCGATGATAATATTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGC < 1:840309/65‑1 GTCCGGCATGAATAGCGATCATAATTTTAACGCCAGTGTTAGCCGGCGCGCGCGCTGCCGGACGCGTT < 1:13226779/68‑1 GTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTT < 1:23558631/68‑1 GTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTT < 1:16761445/68‑1 GTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTT < 1:4117836/68‑1 GTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTT < 1:17893303/68‑1 GTCCGGCATCAATAGCGATGATAATTCTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGT < 1:20666118/67‑1 CCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTAC < 1:19879369/68‑1 CCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTAC < 1:17595020/68‑1 ctGCATCAATAGAGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCTTTACC < 1:17105940/66‑1 CGGCATCAATGGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:5427865/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:20432073/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:9910148/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:24182772/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:22148211/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:3021031/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:4671466/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:23287487/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:10517579/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:920985/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:976432/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:14073805/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:14480466/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:7994704/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:729366/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:16967348/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:17767143/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:10423693/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:186935/68‑1 CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC < 1:19463363/68‑1 CATCAATAGCTATGATAATTTTATAGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:17408111/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCTTTACCGT < 1:2290442/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:14636790/68‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:29646786/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:10357974/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:2859702/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:29678945/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:3455508/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:3515446/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:9006112/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:7254956/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:7141669/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:6863825/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:6773256/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:6482330/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:23582745/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:17979567/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:20328410/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:23145586/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:23866914/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:24003186/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:10910081/67‑1 CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT < 1:26078196/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTAT > 1:1155640/1‑68 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTAT > 1:3412847/1‑68 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTAT > 1:14604180/1‑68 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:9085210/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:10224194/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:10523498/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:1182713/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:87172/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:13428724/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:27925447/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:15366685/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:15627729/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:16453461/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:17554548/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:6255076/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:19525104/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:20594385/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:21433891/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:23005260/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:3247124/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:2409271/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:24750190/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:28713127/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:24769949/67‑1 ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGGCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:1938104/67‑1 ATCAATAGCCATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA < 1:6060523/67‑1 GCGCAATCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4386352‑4386424‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccggcaTCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTAT < CP009273/4386471‑4386405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |