| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4386424 | 198 (0.550) | 12 (0.040) | 10/96 | NT | 6.7% | coding (543/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II |
| ? | CP009273 | = 4386471 | 164 (0.530) | coding (590/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II | |||||
Only 100 of 327 total aligned reads displayed.
AATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTCACC > CP009273/4386404‑4386538 | aaTACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGa > 1:17023751/1‑68 (MQ=255)aaTACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGa > 1:28728707/1‑68 (MQ=255) aTACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt > 1:14604180‑M2/1‑67 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGCCGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:1938104‑M2/67‑2 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:15627729‑M2/67‑2 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:16453461‑M2/67‑2 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:9085210‑M2/67‑2 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:6255076‑M2/67‑2 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:1182713‑M2/67‑2 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:19525104‑M2/67‑2 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:23005260‑M2/67‑2 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:29646786‑M2/67‑3 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:3455508‑M2/67‑3 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:10357974‑M2/67‑3 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:23287487‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:9910148‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:7994704‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:920985‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:976432‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:10517579‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:14480466‑M2/68‑6 (MQ=255) aCGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAGAATTATCATCGCTATTGAtgccggac < 1:20666118‑M2/67‑9 (MQ=255) cgcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGacac > 1:15458402/1‑68 (MQ=255) cgcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGacac > 1:26713519/1‑68 (MQ=255) cgcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGacac > 1:17551567/1‑68 (MQ=255) gcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcg > 1:7389366/1‑68 (MQ=255) gcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcg > 1:4662025/1‑68 (MQ=255) gcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcg < 1:17394396/68‑1 (MQ=255) gcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcg > 1:28127182/1‑68 (MQ=255) gcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcg > 1:23588948/1‑68 (MQ=255) gTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggc < 1:22883954/68‑1 (MQ=255) gTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggc > 1:16241130/1‑68 (MQ=255) ccGTCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggcgg < 1:3978317/68‑1 (MQ=255) ccGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggcgg < 1:6775574/68‑1 (MQ=255) ccGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggcgg < 1:1802921/68‑1 (MQ=255) ccGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggcgg < 1:11616302/68‑1 (MQ=255) cGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccggacgcgttacc > 1:21109841‑M2/1‑52 (MQ=255) cGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGt < 1:6047658/68‑1 (MQ=255) cGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGt < 1:10061341/68‑1 (MQ=255) ggCAGCGCGCGCGACGGCTACCACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTc > 1:1122233/1‑68 (MQ=255) ggCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTc > 1:11518136/1‑68 (MQ=255) gCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCa > 1:25356678/1‑68 (MQ=255) gCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCa > 1:6410474/1‑68 (MQ=255) gCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATCCCGGACACGGCGGGCa > 1:26118611/1‑68 (MQ=255) cAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCa < 1:20924346/67‑1 (MQ=255) cAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCa < 1:2555401/67‑1 (MQ=255) cAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAg > 1:22359862/1‑68 (MQ=255) cAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAg > 1:2452899/1‑68 (MQ=255) aGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAgg > 1:19719879/1‑68 (MQ=255) aGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAgg > 1:21270567/1‑68 (MQ=255) tcgcgcgaCGGCTAACCCTGGCTATAAAATTATCCACGCTATTGAtgccggacgcgttaccgtatt > 1:20842512‑M2/2‑45 (MQ=255) gcgcgACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccggacgcgttaccgtattact > 1:23880057‑M2/1‑43 (MQ=255) gcgACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTgg < 1:20208795/68‑1 (MQ=255) gACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGgc < 1:29462644/67‑1 (MQ=255) gACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGgc < 1:7159232/67‑1 (MQ=255) cGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCt < 1:14033649/68‑1 (MQ=255) cGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCt < 1:27453469/68‑1 (MQ=255) tAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCg < 1:29800001/68‑1 (MQ=255) tAACACTGGCGATAAAATTATCATCGCTAATGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCg < 1:27345433/68‑1 (MQ=255) aaCACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCgg < 1:12447059/68‑1 (MQ=255) aaCACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCgg < 1:8132139/68‑1 (MQ=255) acacTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCgg > 1:26461909/1‑67 (MQ=255) acacTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCgg > 1:700416/1‑67 (MQ=255) cacTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGcc < 1:1830525/68‑1 (MQ=255) acTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCTCTATCGGcc > 1:21585250/1‑67 (MQ=255) acTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGcc > 1:7283680/1‑67 (MQ=255) acTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGcc > 1:2491150/1‑67 (MQ=255) acTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGcc > 1:24146306/1‑67 (MQ=255) acTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGcc > 1:17606837/1‑67 (MQ=255) acTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGcc > 1:23112373/1‑67 (MQ=255) acTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGcc > 1:8805061/1‑67 (MQ=255) ggCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCgg > 1:24029286/1‑68 (MQ=255) cGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCggtg > 1:23517762/1‑68 (MQ=255) cGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCggt < 1:28650305/67‑1 (MQ=255) cGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCggt < 1:22774717/67‑1 (MQ=255) cGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCggt < 1:20399250/67‑1 (MQ=255) cGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGCACCCTGGCGCTATCGGCCCCggtg > 1:14993208/1‑68 (MQ=255) tAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCggtggt > 1:3368725/1‑67 (MQ=255) tAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCggtggt < 1:4819999/67‑1 (MQ=255) aaTTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTAcgc > 1:9405878/1‑68 (MQ=255) tATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCggg < 1:12895922/68‑1 (MQ=255) tATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCggg > 1:27882544/1‑68 (MQ=255) atcGCTATTGAtgccggacgcgttaccgaattactgctgataacacccgtagtgcggttactttccgt > 1:2260770‑M2/1‑11 (MQ=255) atcGCTATTGAagccggacgcgttaccgtattactgctgataacacccgtagtgcggttactttccgt > 1:28417688‑M2/1‑11 (MQ=255) tcGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGaaa > 1:22081965/1‑68 (MQ=255) cGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGaaaa < 1:16863164/68‑1 (MQ=255) cGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGATATCGGCCCCGGTGGTACGCGGGAGaaaa < 1:27509936/68‑1 (MQ=255) aTTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATg > 1:25863694/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAATTGTc > 1:29317371/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:6676646/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:18620483/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:5580684/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:8971370/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:18905088/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:10819069/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:12298014/1‑67 (MQ=255) gATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTCAc < 1:17960460/68‑1 (MQ=255) aTGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTCAcc > 1:13230447/1‑68 (MQ=255) aTGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTCAcc > 1:8705070/1‑68 (MQ=255) aTGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTCAcc > 1:15141996/1‑68 (MQ=255) | AATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTCACC > CP009273/4386404‑4386538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |