| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4386424 | 198 (0.550) | 12 (0.040) | 10/96 | NT | 6.7% | coding (543/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II |
| ? | CP009273 | = 4386471 | 164 (0.530) | coding (590/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II | |||||
Only 100 of 406 total aligned reads displayed.
ATCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGG > CP009273/4386357‑4386491 | aTCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCA > 1:5745712‑M1/1‑68 (MQ=255) gTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATAAGGTAACGAGTCCGGCAgcgc > 1:10832491/1‑68 (MQ=255) aaaCGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGcgcgcgcg > 1:5586127/1‑68 (MQ=255) aCGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCTtcaatagcgat > 1:28417688‑M1/1‑57 (MQ=255) aCGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGAc > 1:9839728/1‑68 (MQ=255) aCGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGAc > 1:19958195/1‑68 (MQ=255) aCGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGAc > 1:6363630/1‑68 (MQ=255) ggAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACgg < 1:1702564/68‑1 (MQ=255) ggAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACgg < 1:7280109/68‑1 (MQ=255) aaCCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAac > 1:4724331/1‑66 (MQ=255) aCCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAac > 1:24999389/1‑65 (MQ=255) aCCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAac > 1:14793588/1‑65 (MQ=255) cGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTg > 1:5395541/1‑67 (MQ=255) cACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCg > 1:6541535/1‑68 (MQ=255) cACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCg > 1:7887936/1‑68 (MQ=255) cGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATaaa < 1:28784247/68‑1 (MQ=255) gggTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATaaaa > 1:10343937/1‑68 (MQ=255) ggTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAAt > 1:10004495/1‑68 (MQ=255) ggTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAAt > 1:2789787/1‑68 (MQ=255) ggTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAAt > 1:2911502/1‑68 (MQ=255) ggTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAAt > 1:29362291/1‑68 (MQ=255) ggTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAAt > 1:11057952/1‑68 (MQ=255) tgtTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTa > 1:22962161/1‑68 (MQ=255) tgtTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTa > 1:21950745/1‑68 (MQ=255) tgtTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTa > 1:2134661/1‑68 (MQ=255) tgtTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTa > 1:19699131/1‑68 (MQ=255) tCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTatcatc > 1:13694304/1‑68 (MQ=255) tCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTatcatc < 1:6886434/68‑1 (MQ=255) tCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTatcatc < 1:7457585/68‑1 (MQ=255) tCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTatcatc > 1:12651882/1‑68 (MQ=255) agcagTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTatcatc > 1:20775614/1‑66 (MQ=255) gcagTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCt > 1:1598913/1‑68 (MQ=255) gcagTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCt > 1:9592009/1‑68 (MQ=255) gcagTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCt > 1:12478496/1‑68 (MQ=255) agTAATACGGTAACGCGTCCGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgc > 1:23880057‑M1/1‑24 (MQ=255) agTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCt < 1:24284259/66‑1 (MQ=255) agTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTAt > 1:1577928/1‑68 (MQ=255) gTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACCCTGGCGATAAAATTATCATCGCTAtt > 1:26077823/1‑68 (MQ=255) gTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTAtt > 1:3990896/1‑68 (MQ=255) aaTACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTAt < 1:8656804/65‑1 (MQ=255) aaTACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGa > 1:11929737/1‑68 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:2409271‑M2/67‑2 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:20594385‑M2/67‑2 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:15366685‑M2/67‑2 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:24003186‑M2/67‑3 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:23145586‑M2/67‑3 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:29646786‑M2/67‑3 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:17979567‑M2/67‑3 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:20328410‑M2/67‑3 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:22148211‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:23287487‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:186935‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:10517579‑M2/68‑6 (MQ=255) cgcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGacac > 1:18401321/1‑68 (MQ=255) cgcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGacac > 1:2624954/1‑68 (MQ=255) cgcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGacac > 1:17551567/1‑68 (MQ=255) gggtcCGGCAtcaatagcgatgataatattatcgccagtgttagccgtcgcgcgcgctgccggacgc < 1:840309‑M1/65‑58 (MQ=255) gcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcg > 1:28127182/1‑68 (MQ=255) gcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcg > 1:2272782/1‑68 (MQ=255) gTCCGGCAtgaatagcgatcataattttaacgccagtgttagccggcgcgcgcgctgccggacgcgtt < 1:13226779‑M1/68‑61 (MQ=255) gTCCGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgtt < 1:16761445‑M1/68‑61 (MQ=255) gTCCGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgtt < 1:17893303‑M1/68‑61 (MQ=255) gTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggc < 1:25486962/68‑1 (MQ=255) gTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggc > 1:16241130/1‑68 (MQ=255) ccGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttac < 1:17595020‑M1/68‑63 (MQ=255) ccGGCAGGGGGCGCTTCGGCTAACACTGGCGATTAATTTATCTTCGCTATTGATGCCGGTCAcggcgg < 1:27066128/68‑1 (MQ=255) ccGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggcgg < 1:6775574/68‑1 (MQ=255) ccGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggcgg < 1:7142469/68‑1 (MQ=255) ccGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggcgg < 1:22837591/68‑1 (MQ=255) ccGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggcgg < 1:26573674/68‑1 (MQ=255) cGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttacc < 1:19463363‑M1/68‑64 (MQ=255) cGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttacc < 1:14073805‑M1/68‑64 (MQ=255) cGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttacc < 1:920985‑M1/68‑64 (MQ=255) cGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttacc < 1:14480466‑M1/68‑64 (MQ=255) cGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttacc < 1:16967348‑M1/68‑64 (MQ=255) cGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccggacgcgttacc > 1:21109841‑M2/1‑52 (MQ=255) cGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGt < 1:23849392/68‑1 (MQ=255) ggCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTc > 1:11518136/1‑68 (MQ=255) gCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCa > 1:8014356/1‑68 (MQ=255) gCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCa > 1:17296203/1‑68 (MQ=255) cAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgt < 1:3515446‑M1/67‑66 (MQ=255) cAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgt < 1:23582745‑M1/67‑66 (MQ=255) cAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCa < 1:20924346/67‑1 (MQ=255) cAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAg > 1:15028897/1‑68 (MQ=255) cAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAg > 1:22359862/1‑68 (MQ=255) atcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgtat > 1:3412847‑M1/1‑1 (MQ=255) atcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgtat > 1:14604180‑M1/1‑1 (MQ=255) atcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgta < 1:9085210‑M1/67‑67 (MQ=255) atcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgta < 1:1182713‑M1/67‑67 (MQ=255) atcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgta < 1:10224194‑M1/67‑67 (MQ=255) atcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgta < 1:15627729‑M1/67‑67 (MQ=255) atcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgta < 1:3247124‑M1/67‑67 (MQ=255) atcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgta < 1:28713127‑M1/67‑67 (MQ=255) atcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgta < 1:24769949‑M1/67‑67 (MQ=255) atcaatagccatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgta < 1:6060523‑M1/67‑67 (MQ=255) aGCGCGCGCGACGGCTAACACTGGCGATAAGATTATCATCGCTATTGAtgccggacgcgttaccgta > 1:10405791‑M2/1‑48 (MQ=255) aGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAgg > 1:4657010/1‑68 (MQ=255) aGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAgg > 1:3013019/1‑68 (MQ=255) aGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAgg > 1:8855039/1‑68 (MQ=255) aGCGCGAGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAGGGCGGTCAgg > 1:21573290/1‑68 (MQ=255) | ATCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGG > CP009273/4386357‑4386491 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |