| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 519440 = | 324 (0.900) | 18 (0.060) | 8/96 | NT | 5.4% | coding (724/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | 519532 = | 349 (1.130) | coding (816/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
Only 100 of 430 total aligned reads displayed.
TGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCT > CP009273/519375‑519507 | tGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcggg < 1:8171310/68‑1 (MQ=255)tGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcgg < 1:901201/67‑1 (MQ=255)ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:5976785‑M1/66‑68 (MQ=255)ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:27743835‑M1/66‑68 (MQ=255)ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:28466764‑M1/66‑68 (MQ=255)ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:12533487‑M1/66‑68 (MQ=255)ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:16120314‑M1/66‑68 (MQ=255)ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:29163329‑M1/66‑68 (MQ=255)ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:29749288‑M1/66‑68 (MQ=255) tacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCg > 1:3585874‑M1/63‑67 (MQ=255) cGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcgggcgg > 1:6055634/1‑68 (MQ=255) acccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgatagaGGGCggg > 1:24364487‑M1/62‑68 (MQ=255) acccctgtcggggccgtaatcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCggg > 1:23727734‑M1/62‑68 (MQ=255) cccctgtcggggccgtattcggtaccgggcagtctgtcggggaacgctgaggcagagagaGGGCGGGa < 1:19793585‑M1/8‑1 (MQ=255) aCCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAg > 1:8470777/1‑68 (MQ=255) aCCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAg < 1:28737842/68‑1 (MQ=255) ccGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt < 1:14991006/68‑1 (MQ=255) ccGGCGGGAGGCCGCCGGTGACCTGGCCGGGGAACGCACCGGCGTGACGGACGGTGCCGGGCGGGAGt < 1:10509525/68‑1 (MQ=37) cGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt > 1:12081784/1‑67 (MQ=255) tgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGa < 1:3897617‑M1/8‑1 (MQ=255) ggCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGtt > 1:15753870/1‑67 (MQ=255) cGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:10569528/1‑68 (MQ=255) cGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:21805729/1‑68 (MQ=255) cGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:9371746/1‑68 (MQ=255) cGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:12231968/1‑68 (MQ=255) cGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:3773215/1‑68 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:23056853/68‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:1087430/68‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:6732668/68‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:16998015/68‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:28911344/68‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCCGCGTGACGGACTGTGCCGGGCGGGAGTTCCGt < 1:20295090/68‑1 (MQ=255) cggggccgtattcggtcccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGt > 1:14556905‑M1/54‑68 (MQ=255) gAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCt < 1:20053388/68‑1 (MQ=255) aGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCt < 1:16186669/67‑1 (MQ=255) gccgccGGTGACCTGGCCGGGGGAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:15326781/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:22698347/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:5448047/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:28049158/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:10031185/1‑68 (MQ=255) cgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGTCTGGt > 1:26470650‑M1/48‑67 (MQ=255) ccgccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTgg < 1:21986838/66‑1 (MQ=255) ccgccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt < 1:4870370/67‑1 (MQ=255) ccgccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt < 1:20442730/67‑1 (MQ=255) ccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTg > 1:23936029/1‑68 (MQ=255) ttcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGTCTGGTGCTGa > 1:22374347‑M1/44‑68 (MQ=255) cgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGa < 1:6477286/68‑1 (MQ=255) cgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGa < 1:4992283/68‑1 (MQ=255) cgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGa < 1:3380406/68‑1 (MQ=255) cgGTGACCTCTCCGGCGATCGCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGa < 1:21003046/68‑1 (MQ=21) cgGTGACAGGCCCGGGGCACTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGa < 1:13020966/68‑1 (MQ=21) tGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGAcc < 1:3696226/67‑1 (MQ=255) ccTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACg < 1:13444035/67‑1 (MQ=255) ccTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGc > 1:4435875/1‑68 (MQ=255) ccTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCAGTCTGGTGCTGACCACGc > 1:26606550/1‑68 (MQ=255) gggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAgg > 1:18960240‑M1/35‑68 (MQ=255) ggCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAgg < 1:27041811/68‑1 (MQ=255) ccGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgc > 1:24962781/1‑67 (MQ=255) ccGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgc > 1:24791783/1‑67 (MQ=255) ccGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgc > 1:10272220/1‑67 (MQ=255) ccGGGGAAATCACCGGCGTGACGGACCGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgc > 1:6194020/1‑67 (MQ=255) cGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgcgc > 1:13978527/1‑68 (MQ=255) ggggAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCa < 1:17348285/68‑1 (MQ=255) gAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGc < 1:20951875/67‑1 (MQ=255) gAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGc < 1:11679256/67‑1 (MQ=255) gtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt > 1:22925461‑M1/26‑67 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:28376811/67‑1 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:9156871/67‑1 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:26311109/67‑1 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:26866193/67‑1 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:29423607/67‑1 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:18454173/67‑1 (MQ=255) aaTCACCGGCGTGACGGACGGGGCCGGGCGGGAGTTCCGTCTGGAGCTGACCACGCAGGCGCAGCGt < 1:25788836/67‑1 (MQ=18) aTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGc < 1:19584306/68‑1 (MQ=255) tCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCg > 1:8940552/1‑68 (MQ=255) tCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCg > 1:7882830/1‑68 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:7695986/68‑1 (MQ=255) ccGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGaa > 1:637995/1‑68 (MQ=255) cGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAagag > 1:5797596/1‑67 (MQ=255) gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAgg < 1:18818118/67‑1 (MQ=255) gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAgg < 1:14305325/67‑1 (MQ=255) gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAgg < 1:4064485/67‑1 (MQ=255) gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGc < 1:19159355/68‑1 (MQ=255) gacggacgGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGccc < 1:17537485/68‑1 (MQ=255) gacggacgGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGccc < 1:8865881/68‑1 (MQ=255) gacggacgGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGcc < 1:9746441/67‑1 (MQ=255) cggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc < 1:3274170/67‑1 (MQ=255) cggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc < 1:25160168/67‑1 (MQ=255) cggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc < 1:23413538/67‑1 (MQ=255) cggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc < 1:20676435/67‑1 (MQ=255) cggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc < 1:11283011/67‑1 (MQ=255) cggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACct < 1:24592885/68‑1 (MQ=255) tGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACctct < 1:27365337/67‑1 (MQ=255) tGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACctct < 1:12662563/67‑1 (MQ=255) gCCGGGCGGGAGTTCCGTCTGTTGCTGACCACGCAGGCGCAGCGTTCGGAAGAGGCCCGCACCTCTTc < 1:13780283/68‑1 (MQ=37) gCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTc < 1:16654090/68‑1 (MQ=255) ccGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGGACCTCTTc > 1:21564791/1‑67 (MQ=255) cgggcgggAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGc < 1:27561715/68‑1 (MQ=255) cgggcgggAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGc < 1:25699560/68‑1 (MQ=255) GGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCt < 1:13170167‑M1/68‑1 (MQ=255) | TGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCT > CP009273/519375‑519507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |