| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 691855 = | 323 (0.900) | 46 (0.140) +TAATG |
3/102 | NT | 12.5% | intergenic (+123/+31) | ubiF/glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| ? | CP009273 | 691998 = | 382 (1.060) | noncoding (75/75 nt) | glnV | tRNA‑Gln | |||||
Only 100 of 429 total aligned reads displayed.
TCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGG > CP009273/691788‑691922 | agcggtaaggcaccggattttgattccggcattcccaggttcgaatcctcgtaccccagccacattaa < 1:29143009‑M1/1‑1 (MQ=255)agcggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaa < 1:26559013‑M1/1‑1 (MQ=255)agcggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaa < 1:8352663‑M1/1‑1 (MQ=255)agcgggaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaa > 1:8985672‑M1/68‑68 (MQ=255) gcggtaaggcaccggtttttgataccggcattcccaggttcgaatcctcgtaccccagccacattaaa < 1:11885527‑M1/2‑1 (MQ=255) gcggtaaggcaccggattttgattccggcattccgaggttcgaatcctcgtaccccagccacattaaa < 1:27883108‑M1/2‑1 (MQ=255) gcggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaaa < 1:15696774‑M1/2‑1 (MQ=255) cGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCaa > 1:3455191/1‑68 (MQ=255) cGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCaa > 1:11044374/1‑68 (MQ=255) cggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaaaa < 1:22477063‑M1/3‑1 (MQ=255) gtaaggcaccggattctggttccggcattccgaggttcgaatcctcgtaccccagccaaattaaaaaa < 1:25855883‑M1/5‑1 (MQ=255) aTCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCaaaaa < 1:13028100/68‑1 (MQ=255) aaggcaccggtttttgataccggcattccgaggttcgaatcctcgtaccccagccaaattaaaaaacc < 1:5222932‑M1/7‑3 (MQ=255) cGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGc > 1:13967133/1‑67 (MQ=255) aggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGc < 1:7937042‑M1/7‑1 (MQ=255) ggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAagcgc < 1:10239554‑M1/9‑3 (MQ=255) ggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAagcac < 1:6557668‑M1/9‑3 (MQ=255) ggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:21948532‑M1/9‑1 (MQ=255) ggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:16497705‑M1/9‑1 (MQ=255) gcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:17130998‑M1/9‑1 (MQ=255) gcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:5795356‑M1/9‑1 (MQ=255) gcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccaatttaAAAAAgctgg < 1:9239238‑M1/10‑3 (MQ=255) gcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccaaattaATAaagcacg < 1:25021146‑M1/10‑4 (MQ=255) gcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccaaattaAAAaagcacg < 1:4024304‑M1/10‑4 (MQ=255) gcaccggattctgattccggcattccaaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:12692164‑M1/9‑1 (MQ=255) caccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:12262628‑M1/9‑1 (MQ=255) accggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTCGc > 1:4747220‑M1/57‑67 (MQ=255) aTTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGcc > 1:27355216/1‑68 (MQ=255) aGGATAAGACGTGTCAACATCGCATTCGCCATTGCATGAACGCAGAAAAGCAAAAAGCTCGCCGaatc > 1:27541319/1‑66 (MQ=255) aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGc > 1:23685507/1‑68 (MQ=255) aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGc > 1:6269991/1‑68 (MQ=255) gATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGa > 1:15429167/1‑68 (MQ=255) aTAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGa < 1:16943468/67‑1 (MQ=255) tAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGc < 1:23061790/68‑1 (MQ=255) aaGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCt < 1:559405/68‑1 (MQ=255) aaGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCt < 1:2682810/68‑1 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:6388631/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:25275280/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:5391986/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:22813521/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:9596348/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:8291325/1‑68 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGACGCGAGCttt < 1:20611612/66‑1 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttttt > 1:24588726/1‑68 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttttt > 1:29836037/1‑68 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:21721007/66‑1 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:18238698/66‑1 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:28511626/66‑1 (MQ=255) cGTGTCAACATCGCATTCGACAATTAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:8576/66‑1 (MQ=255) tCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAt > 1:28011733/1‑68 (MQ=255) cAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtg > 1:18871498/1‑68 (MQ=255) aCATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg < 1:6617811/68‑1 (MQ=255) aCATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg < 1:13615966/68‑1 (MQ=255) aCATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:14317153/1‑68 (MQ=255) aCATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg < 1:15989331/68‑1 (MQ=255) aCATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:4578857/1‑68 (MQ=255) aCATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:25473428/1‑68 (MQ=255) aCATCGCATTCGACATTCAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg < 1:20664649/68‑1 (MQ=255) cATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:15844545/1‑67 (MQ=255) cATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:9896936/1‑67 (MQ=255) aTCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:25559926/1‑66 (MQ=255) aTCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:11592541/1‑66 (MQ=255) aTCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:19776113/1‑66 (MQ=255) aTCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGc < 1:13329331/68‑1 (MQ=255) tCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:19085114/1‑65 (MQ=255) tCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:29432541/1‑65 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTgggg > 1:6035114/1‑68 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:27146393/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:6842886/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:176908/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:20210015/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:21091338/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:23157665/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:4495846/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:24868004/67‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt < 1:14596777/68‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt < 1:26131842/68‑1 (MQ=255) cGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTAc > 1:15258054/1‑68 (MQ=255) aCATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGa > 1:10842408/1‑68 (MQ=255) aCATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGa > 1:24111034/1‑68 (MQ=255) cATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAg > 1:25661872/1‑68 (MQ=255) ttGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGa > 1:3223686/1‑68 (MQ=255) tgaatgaaCGCAGAAAATCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGAt < 1:26442646/68‑1 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:3863777/1‑68 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:28869190/1‑68 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:7045769/1‑68 (MQ=255) accccagccacattaAAAAAGCTCGCCGAAGCGAGCTTTTTTATTGGGGCTGGGGTACGAGGATTCGa < 1:14985908‑M1/53‑1 (MQ=255) gaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGaa < 1:27723597/68‑1 (MQ=255) gaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGaa < 1:9718993/68‑1 (MQ=255) ccagccacattaAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGaa < 1:8863185‑M1/54‑1 (MQ=255) aCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAcc < 1:876385/68‑1 (MQ=255) aCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAcc < 1:10564717/68‑1 (MQ=255) cGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAcc > 1:7735455/1‑67 (MQ=255) cGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAcc > 1:2078720/1‑67 (MQ=255) cGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAcc > 1:22294813/1‑67 (MQ=255) aaaGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCgc > 1:22853160/1‑64 (MQ=255) aaaGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAAt < 1:29235517/68‑1 (MQ=255) aaaGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAAt > 1:12370291/1‑68 (MQ=255) gCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGcc > 1:7462305/1‑68 (MQ=255) aaaaaGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCgg > 1:23969700/1‑68 (MQ=255) | TCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGG > CP009273/691788‑691922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |