| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 776085 | NA (NA) | 50 (0.150) +GTT |
4/106 | NT | 10.0% | noncoding (76/76 nt) | lysT | tRNA‑Lys |
| ? | CP009273 | = 776400 | 478 (1.330) | intergenic (+26/‑124) | lysW/valZ | tRNA‑Lys/tRNA‑Val | |||||
Only 100 of 362 total aligned reads displayed.
TCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCG > CP009273/776021‑776152 | tCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATc < 1:10231243/68‑1 (MQ=31)tCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATc > 1:17407022/1‑68 (MQ=31)tCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATc < 1:24207318/68‑1 (MQ=31)tCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATc < 1:13454656/68‑1 (MQ=31)tCAGTTGGTAGAGCAGTTGAATTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATc > 1:16623274/1‑68 (MQ=14) cAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCg < 1:6618809/68‑1 (MQ=33) tGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCt < 1:16228567/66‑1 (MQ=37) tGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTaa > 1:18730900/1‑68 (MQ=40) tGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTaa < 1:21980274/68‑1 (MQ=40) tGGTAGAGCAGTTGACATTTAATCAATTGGGCGCAGGTTCGAATCCTGCACGACCCACCAATCGc < 1:2587036/65‑1 (MQ=255) ggTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAg < 1:29384906/68‑1 (MQ=255) tAGAGCAGTTGACTTTTAGTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGt > 1:8519635/1‑68 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAgg < 1:12871169/67‑1 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAgg < 1:28147447/67‑1 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGt > 1:17744782/1‑68 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGt > 1:7634721/1‑68 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATACTGCACGACCCACCAATCGCTAAgg < 1:12938104/67‑1 (MQ=255) agagCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGt < 1:5233331/67‑1 (MQ=255) gagCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTgg > 1:8631675/1‑68 (MQ=255) gagCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATAGCTAAGGTgg > 1:16875688/1‑68 (MQ=255) gCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTgg < 1:2650175/66‑1 (MQ=255) gCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGATAAGGTGGaa > 1:20670497/1‑68 (MQ=255) aGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGc > 1:1643565/1‑68 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCg < 1:19864967/66‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:21768550/68‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:23214056/68‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:28875753/68‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:29791168/68‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:23689452/68‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:13971669/68‑1 (MQ=255) aCTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgtag > 1:28255659/1‑68 (MQ=255) cTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgtag < 1:6910197/67‑1 (MQ=255) tttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCTATAAGTTGGAAGCGGTAGTaa > 1:7166139/1‑68 (MQ=17) tttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTaa > 1:1944801/1‑68 (MQ=255) aTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACg < 1:15421147/68‑1 (MQ=255) aTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACg > 1:15589256/1‑68 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGt > 1:3568119/1‑68 (MQ=255) aaTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGa > 1:14252612/1‑68 (MQ=255) aTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGaa < 1:5565065/68‑1 (MQ=255) ttGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAg < 1:16931892/68‑1 (MQ=255) ttGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAg < 1:23916149/68‑1 (MQ=255) ttGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAg < 1:24819250/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACTACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:27398778/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:25092250/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:14242614/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:29163028/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:4320237/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg > 1:19266636/1‑68 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:17620079/68‑1 (MQ=255) cGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATaa < 1:8065316/68‑1 (MQ=255) gCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAAc < 1:5000038/68‑1 (MQ=255) aGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACg < 1:28746500/67‑1 (MQ=255) aGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACg < 1:27058772/67‑1 (MQ=255) aGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACg < 1:19570852/67‑1 (MQ=255) aGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACg < 1:11536973/67‑1 (MQ=255) aGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGGGGAAGCGGTAGTAAAACGTGAAGGATAACg < 1:11739915/67‑1 (MQ=255) ggTTCGAATCCTGCACGACCCACCAATCGATAAGGTGGAAGCGGTAGAAAAACGTGAAGGATACCGtt > 1:9891602/1‑68 (MQ=25) ttCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTg < 1:29661592/67‑1 (MQ=255) tCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGc < 1:8994044/67‑1 (MQ=255) tCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCa < 1:26740496/68‑1 (MQ=255) tCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGAAGTAAAACGTGAAGGATAACGTTGCa < 1:18539640/68‑1 (MQ=255) cGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCAt < 1:11167480/68‑1 (MQ=255) aTCCTGCACGACCCACCATTGGGTATGTTGGAATCTGTAGTAAAACGAGAAGGATAACGATGGATGa > 1:14770271/1‑67 (MQ=16) aTCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGa > 1:3266722/1‑67 (MQ=255) aTCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGa > 1:9672522/1‑67 (MQ=255) tCCTGCACGACCCACCAATCGTAAAGGTGGATGCCGTAGTAACACGTGAAGGATAACGTTGCATCAGc > 1:9523970/1‑68 (MQ=21) tCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGc < 1:28508453/68‑1 (MQ=255) tCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGc < 1:25368771/68‑1 (MQ=255) ccTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCa > 1:4727900/1‑68 (MQ=255) ccTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCa < 1:15101466/68‑1 (MQ=255) cACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACg > 1:3712413/1‑67 (MQ=255) aCGACCCACCAATCGCTAAGGTTGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg < 1:18267691/67‑1 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg < 1:15735038/67‑1 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg < 1:25509334/67‑1 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg > 1:17077273/1‑67 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg > 1:22171495/1‑67 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg < 1:24391572/67‑1 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg < 1:27351020/67‑1 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg > 1:23331679/1‑67 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg > 1:12449119/1‑67 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTAGCATGAGCAACgg > 1:8232977/1‑67 (MQ=255) cGACCCACCAATCGCTAAGGTGGACGCGGTAGTCAAACGGGCAGGATAACGTTGCATGAGCAACGGcc < 1:11280617/68‑1 (MQ=38) cGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGcc < 1:18930801/68‑1 (MQ=255) aCCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCg > 1:10092380/1‑68 (MQ=255) aCCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCg > 1:27610555/1‑68 (MQ=255) aCCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCg > 1:6243711/1‑68 (MQ=255) cccACCAATCGATAAGGGGGAACCGGTAGTAAAACGGGAAGGATAACGTTGCATGAGCAACGGCCCg < 1:7241377/67‑1 (MQ=37) accaATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAgg < 1:14564308/68‑1 (MQ=255) accaATCGCTAAGGGGGAAGCGGCAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAgg < 1:11868148/68‑1 (MQ=255) ccaATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAggg < 1:4918867/68‑1 (MQ=255) ccaATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAgg > 1:13107515/1‑67 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:6341091/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:22843468/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:20173379/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:10946727/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:10773725/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:20882223/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:3883171/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:4451757/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAACGATAACGTTGCATCAGCAACGGCCCGTAGGGCg > 1:16808512/1‑68 (MQ=25) | TCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCG > CP009273/776021‑776152 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |