| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 776085 | NA (NA) | 50 (0.150) +GTT |
4/106 | NT | 10.0% | noncoding (76/76 nt) | lysT | tRNA‑Lys |
| ? | CP009273 | = 776400 | 478 (1.330) | intergenic (+26/‑124) | lysW/valZ | tRNA‑Lys/tRNA‑Val | |||||
Only 100 of 723 total aligned reads displayed.
TTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACC > CP009273/776333‑776467 | aTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACGTGGAAGCCAGATGATAAGCg > 1:1953880/1‑68 (MQ=14) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACGAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:23553224/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:2381743/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:25648659/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt > 1:11514829/1‑68 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:27098814/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:7143469/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:12326893/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:12482261/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:14553169/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:13420059/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAgg < 1:8687912/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAgg < 1:14886951/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAgg < 1:13933849/68‑1 (MQ=255) tGGGCGCAGGTGCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAgg < 1:20795504/68‑1 (MQ=255) cGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCTAAGACAGATGTTAAGCGTGTAGGATaa < 1:10603983/68‑1 (MQ=255) gCATGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAAc < 1:10198395/68‑1 (MQ=255) gCAGGTTCGAATCCTGCACGACCCACCAGTATATAATTGGGAGGCAGTTGTTAAGCGTGTAGGATAAc > 1:8314566/1‑68 (MQ=9) cAGGTTCGAATCCTGCACGACCCACCAGTATTTAATTGGAAGACAGAAGTTAAGCGTGAAGGATAACg > 1:21108883/1‑68 (MQ=14) aGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACg < 1:5713309/67‑1 (MQ=255) cGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGt < 1:21599211/68‑1 (MQ=255) cGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGt < 1:28177772/68‑1 (MQ=255) tCCTGCACGACCCACCAGTTTTAACATCGATGACAGATGTTAAGCGTGTAGGATAACTTTGCGTCAGc > 1:29695957/1‑68 (MQ=18) tCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGc < 1:26425566/68‑1 (MQ=255) ccTGCACGACCCACCAGTTTTAACATCGATGCCAGATGGTAAaactggtgggtcgtgcaggcttcga < 1:19044178‑M2/67‑26 (MQ=255) ccTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACTTTGCTTAAGCa > 1:23991887/1‑68 (MQ=17) ccTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCa > 1:4901383/1‑68 (MQ=255) ccTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCa > 1:10009079/1‑68 (MQ=255) cACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCTTAAGCAACg > 1:10415221/1‑67 (MQ=255) aCGACCCACCAGTTTTAACATCGAAGCCAGAAGTTAACCGTGAAGGATAACGTTGGGTCAGCACCgg > 1:18831590/1‑67 (MQ=14) aCGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACgg > 1:4548393/1‑67 (MQ=255) aCGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACgg > 1:24913405/1‑67 (MQ=255) aCGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACgg < 1:23361296/67‑1 (MQ=255) aCGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGc < 1:24522859/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:927053/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:28401922/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:2886666/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:6308159/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:23033776/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:11225227/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:17808973/68‑1 (MQ=255) aCCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCg > 1:25942249/1‑68 (MQ=255) aCCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCg > 1:21722313/1‑68 (MQ=255) aGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGgcg > 1:12071234/1‑68 (MQ=255) aGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGgcg > 1:16958618/1‑68 (MQ=255) aGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGgcg > 1:17646538/1‑68 (MQ=255) aGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGgcg > 1:15125531/1‑68 (MQ=255) taCATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGCGCGagcgaa < 1:20581661/67‑1 (MQ=255) aaCATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaa < 1:8996936/68‑1 (MQ=255) aaCATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaa < 1:28000086/68‑1 (MQ=255) aaCATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaa < 1:29518284/68‑1 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATGACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:18154940/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:14301283/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:762056/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:3742053/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:27657180/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:27326126/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:13521996/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagagaagc > 1:3382577/1‑68 (MQ=255) aTCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAgg > 1:13180879/1‑56 (MQ=255) gAAGACAGATGTTAAGCGTGTAGGAAAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGt < 1:15916215/68‑1 (MQ=255) gACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCa > 1:24714666/1‑67 (MQ=255) cccAGTTGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:6712702/66‑1 (MQ=255) aCAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAta > 1:6472978/1‑67 (MQ=255) aCAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt > 1:26189370/1‑67 (MQ=255) aCAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt > 1:3912785/1‑67 (MQ=255) gATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:5107051‑M2/1‑8 (MQ=255) gATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:5599613‑M2/1‑8 (MQ=255) gATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt > 1:11809671/1‑67 (MQ=40) tttttaacactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:25094978‑M2/4‑7 (MQ=255) aTGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta < 1:16170622‑M2/67‑61 (MQ=255) aTGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta < 1:4265339‑M2/67‑61 (MQ=255) aTGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta < 1:2926665‑M2/67‑61 (MQ=255) aTGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta < 1:18435262‑M2/67‑61 (MQ=255) aTGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta < 1:16539373‑M2/67‑61 (MQ=255) aTGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGc < 1:2670616/68‑1 (MQ=40) tGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctacc > 1:21906146‑M2/1‑6 (MQ=255) tGTTAAGCGTGTAGGATATCGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt < 1:20017638/65‑1 (MQ=255) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTATGGCGAGCGAAGCGAGTCATCCTGc < 1:24239276/67‑1 (MQ=255) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:8132785/62‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:19340936/62‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGACTCAt < 1:21358876/62‑1 (MQ=255) tGTTAAGCGTGTAGGATAACGTTGCGGCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:9502531/62‑1 (MQ=25) gTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctacca > 1:22495929‑M2/1‑5 (MQ=255) gTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctacca > 1:6970208‑M2/1‑5 (MQ=255) gTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:15499421‑M2/1‑5 (MQ=255) gTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCAc > 1:5998604/1‑68 (MQ=40) tAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACg > 1:20349133/1‑67 (MQ=40) aaGCGTGTAGGATAACGTTGCGTCTGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:13332484/68‑1 (MQ=255) aaGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:5224378/68‑1 (MQ=40) aaGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:19866411/68‑1 (MQ=40) aaGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:17399139/68‑1 (MQ=40) aaGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:16410805/68‑1 (MQ=40) aaGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:12980987/68‑1 (MQ=40) aaGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:15828660/68‑1 (MQ=40) aGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:25267670/1‑67 (MQ=40) aGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:26896428/1‑67 (MQ=40) aGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:22166157/1‑67 (MQ=40) aGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:10821318/1‑67 (MQ=40) aGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:20156323/1‑67 (MQ=40) | TTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACC > CP009273/776333‑776467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |