| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1793039 | 136 (0.380) | 10 (0.030) | 7/96 | NT | 8.1% | coding (161/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit |
| ? | CP009273 | = 1793052 | 109 (0.350) | coding (148/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit | |||||
Only 100 of 265 total aligned reads displayed.
GCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAA > CP009273/1792973‑1793106 | gcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtgAGCTGCCg > 1:2809617‑M1/60‑67 (MQ=255)gcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtgAGCTGCCg > 1:14096156‑M1/60‑67 (MQ=255)gcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtgAGCTGCCg > 1:25725443‑M1/60‑67 (MQ=255)gcgcgtcgaatatttgggtaaaaaagggcacttaacccttcagatgacgaccctgcgtgAGCTGCCg > 1:6712817‑M1/60‑67 (MQ=255) tttACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGAc < 1:1965642/68‑1 (MQ=255) tttACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGAc > 1:13028109/1‑68 (MQ=255) tttACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGAc < 1:10630259/68‑1 (MQ=255) aCGCGCATTCAGCGGCTGCTTAACCTGCTCTTTCGCTTCGTTGATAACCGGACCAGCTGCCGGACGct < 1:3237053/68‑1 (MQ=255) aCGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGct < 1:11341950/68‑1 (MQ=255) aCGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGct < 1:23963734/68‑1 (MQ=255) aCGAGCATGCCGCGCCGGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGct < 1:499985/68‑1 (MQ=255) gcgcATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGctct > 1:20010229/1‑68 (MQ=255) gcgcATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGctct > 1:17398232/1‑68 (MQ=255) gcATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCtcttc < 1:6247441/68‑1 (MQ=255) gcATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCtcttc < 1:8483522/68‑1 (MQ=255) gcATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCtcttc < 1:17521161/68‑1 (MQ=255) tCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGc < 1:1136828‑M2/68‑2 (MQ=255) aGCGCCTGCTGACCCTGCTCTTTCGCTTCGTGGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcg < 1:10851000‑M2/67‑3 (MQ=255) aGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCGGGACGCTCTTCTGGcg < 1:21907897‑M2/67‑3 (MQ=255) aGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcg < 1:9542891‑M2/67‑3 (MQ=255) cgcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCCGCTGCCGgcggaagcgcggccggca > 1:8437757‑M1/1‑50 (MQ=255) cgcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGGCGgcaggagggggtccggcg > 1:1570725‑M1/1‑50 (MQ=255) cgcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGccagaagagcgtccggca > 1:24166595‑M1/1‑50 (MQ=255) cgcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGCCGCTCTTCTGGcggca < 1:9158931‑M2/68‑6 (MQ=255) cgcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:21168945‑M2/68‑6 (MQ=255) cgcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:7304785‑M2/68‑6 (MQ=255) cgcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:27370136‑M2/68‑6 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcag > 1:20998055‑M2/1‑62 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcag > 1:16241498‑M2/1‑62 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcag > 1:24362088‑M2/1‑62 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:7873181‑M2/67‑6 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:14302280‑M2/67‑6 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggc > 1:23019445‑M2/1‑62 (MQ=255) ccTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:26100390‑M2/66‑6 (MQ=255) ccTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:6460446‑M2/66‑6 (MQ=255) ccTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:14956638‑M2/66‑6 (MQ=255) ctgctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagc > 1:24542706‑M2/1‑60 (MQ=255) ctgctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagc > 1:5137215‑M2/1‑60 (MQ=255) ctgctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagc > 1:3896491‑M2/1‑60 (MQ=255) ctgctgAACCTGCTCTATCGCTTCGTTGCTCACCCCACCAGCTGCCCGACGCTCTTCAGGCGGCAGCt < 1:15949271/68‑1 (MQ=255) tgctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTc < 1:14678202/68‑1 (MQ=255) gctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCa < 1:3192784/68‑1 (MQ=255) gctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCa < 1:13803935/68‑1 (MQ=255) ctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCAc > 1:2165137/1‑68 (MQ=255) tgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCAc < 1:143546/67‑1 (MQ=255) tgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCAc < 1:12078004/67‑1 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGccagaagcgcgtccggcagcgggtggggt > 1:4459226‑M1/1‑39 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg > 1:26408726/1‑68 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg < 1:11775285/68‑1 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg < 1:1357555/68‑1 (MQ=255) cTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGccagaagagcgtccggcagctggtgcggtt > 1:604788‑M1/1‑38 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:3892752/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:12656701/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:29766736/68‑1 (MQ=255) tctTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgtcgt < 1:5798219/68‑1 (MQ=255) tctTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgtcgt < 1:19355022/68‑1 (MQ=255) ctTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgtcgtc > 1:15302411/1‑68 (MQ=255) tttCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa > 1:8702100/1‑68 (MQ=255) tttCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa < 1:26494819/68‑1 (MQ=255) ttCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa > 1:12199736/1‑67 (MQ=255) tCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATc < 1:1852965/68‑1 (MQ=255) cGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa > 1:20461690/1‑65 (MQ=255) cGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCt < 1:7464918/68‑1 (MQ=255) ttCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGaa > 1:9114131/1‑68 (MQ=255) ttCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGaa > 1:18266159/1‑68 (MQ=255) tCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAg < 1:6558555/68‑1 (MQ=255) cGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAgg < 1:3503683/68‑1 (MQ=255) gTTGATACCCGCACCAGCGGCCGCACGCCCTTCTCGcggcagcgggtgcggttatcaacgaagcgaa > 1:12108495‑M2/1‑36 (MQ=255) gTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAggg < 1:16488208/68‑1 (MQ=255) tGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGt < 1:21082095/67‑1 (MQ=255) catACCCGCACCCGCTGCCCGACGCACTTCTGGcggcagctggtgcggttatcaacgaagcgaaagag > 1:6855176‑M2/2‑33 (MQ=255) tAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAg > 1:26796023/1‑68 (MQ=255) accctgcgtgAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTGATCTGAAGGGTTAAg < 1:19945359‑M1/58‑1 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:29068452/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:12890744/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:10803903/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:22902446/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:5522729/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:10940658/1‑67 (MQ=255) aCCGCACCAGCGGCCGGACGCGCTTCTGGcggcagctggtgcggttatcaacgaagcgaaagagcagg > 1:17021254‑M2/1‑29 (MQ=255) ccGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGc < 1:29454443/68‑1 (MQ=255) gtgAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCtt < 1:23725196‑M1/65‑1 (MQ=255) aCCAGCTGCCGccagaagagcgtccggcagctggtgcggttatcaacgaagcgaaagagcaggttca > 1:12590113‑M1/1‑11 (MQ=255) aCCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCt < 1:29391077/67‑1 (MQ=255) ccAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttt < 1:2462820/68‑1 (MQ=255) ccAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttt < 1:27074832/68‑1 (MQ=255) ccAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttt < 1:4031550/68‑1 (MQ=255) ccAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttt < 1:28523534/68‑1 (MQ=255) AGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttttt < 1:7824787‑M1/68‑1 (MQ=255) AGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttttt < 1:12873954‑M1/68‑1 (MQ=255) gCTGCCGccagaagagcgtccggcagctggtgcggttatcaacgaagcgaaagagcaggttcagcag > 1:26551003‑M1/1‑7 (MQ=255) GCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCtttttt < 1:23437244‑M1/68‑1 (MQ=255) cTGCCGccagaagagcgtccggcagctggtgcggttatcaacgaagcgaaagagcaggttcagcaggc > 1:15417928‑M1/1‑6 (MQ=255) tGCCGccagaagagcgtccggcagctggtgcggttatcaacgaagcgaaagagcaggttcagcagg < 1:12818115‑M1/66‑62 (MQ=255) TGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTa < 1:25335556‑M1/67‑1 (MQ=255) GCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTAcc > 1:2733661‑M1/1‑68 (MQ=255) cgccagaagagcgtccggcagctggtgcggttatcaacgaagcgaaagagcaggttcagcaggcgct < 1:10233053‑M1/67‑66 (MQ=255) CGGTCGCTCTTCTGGCGGCAGCTCTCGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCa > 1:27612479‑M1/1‑68 (MQ=255) CGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCa > 1:8956535‑M1/1‑68 (MQ=255) gccagaagagcgtccggcagctggtgcggttatcaacgaagcgaaagagcaggttcagcaggcgctga < 1:830451‑M1/68‑68 (MQ=255) | GCTTTACGCGCATTCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAA > CP009273/1792973‑1793106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |