| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1793039 | 136 (0.380) | 10 (0.030) | 7/96 | NT | 8.1% | coding (161/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit |
| ? | CP009273 | = 1793052 | 109 (0.350) | coding (148/984 nt) | pheS | phenylalanine tRNA synthetase, alpha subunit | |||||
Only 100 of 206 total aligned reads displayed.
TCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCG > CP009273/1792986‑1793118 | tCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGc > 1:29794181‑M2/1‑67 (MQ=255)tCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGc < 1:1136828‑M2/68‑2 (MQ=255) aGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCGGGACGCTCTTCTGGcg < 1:21907897‑M2/67‑3 (MQ=255) aGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcg < 1:10233053‑M2/67‑3 (MQ=255) aGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcg < 1:9542891‑M2/67‑3 (MQ=255) cgcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:7304785‑M2/68‑6 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcag > 1:20998055‑M2/1‑62 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcag > 1:24362088‑M2/1‑62 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcag > 1:5893779‑M2/1‑62 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcag > 1:29220555‑M2/1‑62 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcag > 1:10884566‑M2/1‑62 (MQ=255) gcCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:14302280‑M2/67‑6 (MQ=255) ccTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGCCGCTCTTCTGGcggca < 1:12998950‑M2/66‑6 (MQ=255) ccTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:12818115‑M2/66‑6 (MQ=255) ccTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggca < 1:26100390‑M2/66‑6 (MQ=255) ctgctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagc > 1:5137215‑M2/1‑60 (MQ=255) gctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCa < 1:5735874/68‑1 (MQ=255) gctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCa < 1:13803935/68‑1 (MQ=255) ctgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCAc > 1:3210770/1‑68 (MQ=255) tgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGcggcagctggt > 1:12590113‑M2/1‑56 (MQ=255) tgAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCAc < 1:20802120/67‑1 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGCCGCTCTTCTGGCGGCAGCTCACGCAgg > 1:23712094/1‑68 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg < 1:26531251/68‑1 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg < 1:11775285/68‑1 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg > 1:4095927/1‑68 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg > 1:26408726/1‑68 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg < 1:1357555/68‑1 (MQ=255) ccTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAgg > 1:4008490/1‑68 (MQ=255) cTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAggg > 1:14522733/1‑68 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:6517004/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:27463059/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:19692514/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:3892752/68‑1 (MQ=255) tGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:8412606/68‑1 (MQ=255) tGCTCTTTCGCGTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgt < 1:15311107/68‑1 (MQ=255) ctctTTCGCTTCGTTGATAACCGCACAAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgtcg > 1:29538379/1‑68 (MQ=255) tctTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgtcgt < 1:19355022/68‑1 (MQ=255) tctTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgtcgt < 1:7794566/68‑1 (MQ=255) tctTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGgtcg < 1:12704988/67‑1 (MQ=255) tttCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa < 1:29411184/68‑1 (MQ=255) tttCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa < 1:26494819/68‑1 (MQ=255) tttCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa < 1:27992766/68‑1 (MQ=255) ttCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa > 1:12199736/1‑67 (MQ=255) tCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATc < 1:8595430/68‑1 (MQ=255) tCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATc < 1:1852965/68‑1 (MQ=255) cGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa > 1:27076593/1‑65 (MQ=255) cGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCa > 1:20461690/1‑65 (MQ=255) cGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCt < 1:7464918/68‑1 (MQ=255) cGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCt < 1:3813647/68‑1 (MQ=255) tcagatgacgaccctgcgtgAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCt < 1:9212924‑M1/47‑1 (MQ=255) gCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTg > 1:23077431/1‑68 (MQ=255) ttCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGaa > 1:8446935/1‑68 (MQ=255) ttCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGaa > 1:23243524/1‑68 (MQ=255) ttCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGaa > 1:9114131/1‑68 (MQ=255) ttCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGa < 1:2103652/67‑1 (MQ=255) tCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAg < 1:6558555/68‑1 (MQ=255) tCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAg < 1:21089601/68‑1 (MQ=255) gTTGATACCCGCACCAGCGGCCGCACGCCCTTCTCGcggcagcgggtgcggttatcaacgaagcgaa > 1:12108495‑M2/1‑36 (MQ=255) tGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGt < 1:25097470/67‑1 (MQ=255) catACCCGCACCCGCTGCCCGACGCACTTCTGGcggcagctggtgcggttatcaacgaagcgaaagag > 1:6855176‑M2/2‑33 (MQ=255) tAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAg > 1:16502569/1‑68 (MQ=255) tAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAg > 1:26796023/1‑68 (MQ=255) tAACCGCACCAGCTGCCGGACGCTCATCTGGCGGCAGCTCCCGCAGGGTCGTCATCTGAAGGGTTAAg > 1:3406017/1‑68 (MQ=255) accctgcgtgAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTGATCTGAAGGGTTAAg < 1:19945359‑M1/58‑1 (MQ=255) aaCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt < 1:11168719/68‑1 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:10803903/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:22902446/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:24119312/1‑67 (MQ=255) aCCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGt > 1:13447489/1‑67 (MQ=255) aCCGCACCAGCGGCCGGACGCGCTTCTGGcggcagctggtgcggttatcaacgaagcgaaagagcagg > 1:17021254‑M2/1‑29 (MQ=255) aCCCCACCCGCTGCCGGACGCGCTTCTGGcggcagctggtgcggttatcaacgaagcgaaagagcagg > 1:4459226‑M2/1‑29 (MQ=255) aCCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCtt < 1:22558437/68‑1 (MQ=255) ccAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttt < 1:8853812/68‑1 (MQ=255) ccAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttt < 1:7849070/68‑1 (MQ=255) ccAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttt < 1:2462820/68‑1 (MQ=255) ccAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttt < 1:28523534/68‑1 (MQ=255) AGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCttttt < 1:12873954‑M1/68‑1 (MQ=255) GCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCtttttt < 1:9026868‑M1/68‑1 (MQ=255) GCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCtttttt < 1:23758987‑M1/68‑1 (MQ=255) CTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCtttttt < 1:18276912‑M1/67‑1 (MQ=255) cgcCGGACCCCCTCCTGCcgccagctggtgcggttatcaacgaagcgaaagagcaggttcagcaggcg > 1:1570725‑M2/2‑18 (MQ=255) TGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTa < 1:25335556‑M1/67‑1 (MQ=255) GCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTAcc > 1:2733661‑M1/1‑68 (MQ=255) CGGTCGCTCTTCTGGCGGCAGCTCTCGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCa > 1:27612479‑M1/1‑68 (MQ=255) CGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCa > 1:8300442‑M1/1‑68 (MQ=255) CGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCa > 1:14998497‑M1/1‑68 (MQ=255) CGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCa > 1:21527910‑M1/1‑68 (MQ=255) aCGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCaaa < 1:16332802/67‑1 (MQ=255) aCGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCaaa < 1:16256140/67‑1 (MQ=255) aCGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCaaa < 1:26273605/67‑1 (MQ=255) aCGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCaaa < 1:29742764/67‑1 (MQ=255) cGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAata < 1:15277197/68‑1 (MQ=255) gCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAatat > 1:17712429/1‑68 (MQ=255) ggcggcAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTcgccgc > 1:15973147/1‑67 (MQ=255) ggcggcAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGAcgc > 1:5446201/1‑67 (MQ=255) ggcggcAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGAcgc > 1:23173074/1‑67 (MQ=255) ggcggcAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGAcgc > 1:26572263/1‑67 (MQ=255) ggcggcAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGAcgc > 1:14835833/1‑67 (MQ=255) ggcggcAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGAcgc > 1:2692016/1‑67 (MQ=255) ggcggcAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGAcgc > 1:28931508/1‑67 (MQ=255) | TCAGCGCCTGCTGAACCTGCTCTTTCGCTTCGTTGATAACCGCACCAGCTGCCGGACGCTCTTCTGGCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCG > CP009273/1792986‑1793118 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |