| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2323869 = | 327 (0.910) | 15 (0.050) | 6/94 | NT | 5.0% | pseudogene (4013/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| ? | CP009273 | 2323928 = | 291 (0.960) | pseudogene (3954/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein | |||||
Only 100 of 440 total aligned reads displayed.
GATAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGC > CP009273/2323803‑2323936 | tgagcaatccactattgagcgcgcgctggccatgaactggctggcgaaatatatggcgacaatgCCt > 1:14734282‑M1/65‑67 (MQ=255) tAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCt < 1:18648567/67‑1 (MQ=255) tAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCt < 1:7544084/67‑1 (MQ=255) tAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCt < 1:8080264/67‑1 (MQ=255) aaTGCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGGCCCCTcc < 1:29220588/68‑1 (MQ=255) ttCGTCACCAAAAGACAGAATGTCCGGCACGCCCAGACCAACCCCACGCCAGTCTTCGcccccaca > 1:11856234/1‑63 (MQ=255) gcaatccactattgagcgcgcgctggccatgaactggctggcgaaatatatggcgacaatgCCTCCa > 1:3844225‑M1/62‑67 (MQ=255) tCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGt < 1:22880103/68‑1 (MQ=255) tCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGt < 1:19539521/68‑1 (MQ=255) tCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGt < 1:19988155/68‑1 (MQ=255) tCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGt < 1:8703684/68‑1 (MQ=255) cGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGtt > 1:24455478/1‑68 (MQ=255) cGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGtt > 1:22477356/1‑68 (MQ=255) cGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGtt < 1:20389464/68‑1 (MQ=255) aatccactattgagcgcgcgctggccatgaactggctggcgaaatatatggcgacaatgCCTCCAGtt < 1:26245175‑M1/9‑1 (MQ=255) aatccactattgagcgcgcgctggccatgaactggctggcgaaatatatggcgacaatgCCTCCAGtt > 1:21671911‑M1/60‑68 (MQ=255) aatccactattgagcgcgcgctggccatgaactggctggcgaaatatatggcgacaatgCCTCCAGtt > 1:26845960‑M1/60‑68 (MQ=255) cACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTaa < 1:160950/67‑1 (MQ=255) cACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTaa < 1:5404851/67‑1 (MQ=255) aCCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACt < 1:23957370/68‑1 (MQ=255) aCCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACt < 1:29436310/68‑1 (MQ=255) aCCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACt < 1:4604889/68‑1 (MQ=255) aCCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACt < 1:22693042/68‑1 (MQ=255) aCCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACt < 1:22323055/68‑1 (MQ=255) aCCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACt < 1:26482315/68‑1 (MQ=255) aCCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACt < 1:4351603/68‑1 (MQ=255) aCCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACt < 1:27943661/68‑1 (MQ=255) aaaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTAt < 1:12266390/68‑1 (MQ=255) aaaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTAt < 1:14172428/68‑1 (MQ=255) aaaGAGAGAATGTCCGGCACGGCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:7948981/68‑1 (MQ=255) aaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:3628607/68‑1 (MQ=255) aaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:25919314/68‑1 (MQ=255) aaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:25656362/68‑1 (MQ=255) aaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:24594721/68‑1 (MQ=255) aaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg > 1:13081977/1‑68 (MQ=255) aaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:4765743/68‑1 (MQ=255) aaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:15653332/68‑1 (MQ=255) aaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:16285770/68‑1 (MQ=255) aaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:5992126/68‑1 (MQ=255) aaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:5144765/68‑1 (MQ=255) aaaGAGAGAATGGCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:1722476/68‑1 (MQ=255) aaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGt < 1:18369537/68‑1 (MQ=255) agagagAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGtt > 1:5671167/1‑68 (MQ=255) agagagAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGtt > 1:2319845/1‑68 (MQ=255) agagaATGTCCGGCCCGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCGCCAGTTAACTTATGTTTa > 1:8301439/1‑68 (MQ=255) agagaATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTa > 1:22105450/1‑68 (MQ=255) gagaATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTa > 1:9129350/1‑67 (MQ=255) gaATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGc < 1:1088645/67‑1 (MQ=255) aaTGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGccc > 1:6461171/1‑68 (MQ=255) aaTGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGccc > 1:3440390/1‑68 (MQ=255) aTGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGcc < 1:24083913/66‑1 (MQ=255) aTGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCa > 1:1068350/1‑68 (MQ=255) ccGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATgc < 1:15166091/67‑1 (MQ=255) ggCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGcc < 1:25358805/68‑1 (MQ=255) cACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGccc < 1:21076830/67‑1 (MQ=255) aCGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgc > 1:14418366/1‑68 (MQ=255) aCGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgc > 1:27413450/1‑68 (MQ=255) aCGCCCTGACAAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgc > 1:12494321/1‑68 (MQ=255) ccTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggc > 1:2364001/1‑68 (MQ=255) ccTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcagg < 1:28616057/67‑1 (MQ=255) aCCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggcgcag > 1:4885704/1‑68 (MQ=255) ctggcgaaatatatggcgacaatgCCTCCAGTTTACTTATGTTTAGCCCATGCGcccgccggcgccg < 1:767943‑M1/43‑3 (MQ=255) ctggcgaaatatatggcgacaatgCCTCCAGTTAACTTATGTTTAGCCCATGCGGCcgcaggcgcag < 1:16999153‑M1/43‑1 (MQ=255) ccaacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATTCGCCcgcaggcgcac > 1:1039315/1‑66 (MQ=255) ccaacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggcgcagg < 1:9575356/68‑1 (MQ=255) ccaacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggcgcagg < 1:20925865/68‑1 (MQ=255) ccaacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggcgcag < 1:3231183/67‑1 (MQ=255) caacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggcgcagtc > 1:20528462/1‑66 (MQ=255) caacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCgcaggcgcaggc > 1:11299796/1‑68 (MQ=255) cccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:16505392/37‑1 (MQ=255) cccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCaaa < 1:10012289/68‑1 (MQ=255) ccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCaaa > 1:9788209/1‑67 (MQ=255) ccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCaaa > 1:17387776/1‑67 (MQ=255) ccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCaaa > 1:10232031/1‑67 (MQ=255) ccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCaaa > 1:13926501/1‑67 (MQ=255) ccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCaaa > 1:19433704/1‑67 (MQ=255) aacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAaaca < 1:16720021/68‑1 (MQ=255) aacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAaaca < 1:17624748/68‑1 (MQ=255) aacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGATAaaca < 1:7087546/68‑1 (MQ=255) tatatggcgacaatgCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCTGGCAAaaca < 1:15561907‑M1/51‑1 (MQ=255) cGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAaacaac < 1:14552804/68‑1 (MQ=255) cGCCAGTCTGCGGCCCCTCCAGTTAAGTTATGTTTAGGCCATGCGCCCGCAGGCGCAGGCAAaacaac < 1:27020932/68‑1 (MQ=255) gCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAaaca > 1:13759065/1‑65 (MQ=255) gCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAaaca > 1:7454858/1‑65 (MQ=255) gCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAaaca > 1:4070695/1‑65 (MQ=255) gCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAaaca > 1:19018569/1‑65 (MQ=255) gCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAaaca > 1:28850728/1‑65 (MQ=255) tCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAg > 1:24892898/1‑67 (MQ=255) gcgacaatgCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAg < 1:28447333‑M1/58‑1 (MQ=255) gcgacaatgCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAg < 1:11722619‑M1/58‑1 (MQ=255) cTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGa < 1:21793170/65‑1 (MQ=255) cccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTg > 1:6747271/1‑67 (MQ=255) cccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTg > 1:13361512/1‑67 (MQ=255) cccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTg > 1:14909085/1‑67 (MQ=255) cccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTg > 1:28241112/1‑67 (MQ=255) cccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTg > 1:4197134/1‑67 (MQ=255) ccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGt < 1:29836351/67‑1 (MQ=255) ccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGt < 1:18148410/67‑1 (MQ=255) ccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTc < 1:5487102/68‑1 (MQ=255) CCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGc > 1:12895410‑M1/1‑68 (MQ=255) | GATAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGC > CP009273/2323803‑2323936 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |