| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2323869 = | 327 (0.910) | 15 (0.050) | 6/94 | NT | 5.0% | pseudogene (4013/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| ? | CP009273 | 2323928 = | 291 (0.960) | pseudogene (3954/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein | |||||
Only 100 of 451 total aligned reads displayed.
CTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGG > CP009273/2323861‑2323995 | cccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTg > 1:14909085/1‑67 (MQ=255) cccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTg > 1:6747271/1‑67 (MQ=255) ccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTc < 1:1276268/68‑1 (MQ=255) cccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTc > 1:17460123/1‑67 (MQ=255) cccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCg < 1:11917213/68‑1 (MQ=255) CCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGc > 1:23657096‑M1/1‑68 (MQ=255) CCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGc > 1:7610246‑M1/1‑68 (MQ=255) CCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGc > 1:4118777‑M1/1‑68 (MQ=255) ctccagttgttttgcctgcgcctgcgggcgcatgggctaaacataagttaactggaggCATTGTCGc < 1:4715119‑M2/9‑1 (MQ=255) CTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGcc > 1:22097310‑M1/1‑68 (MQ=255) CTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGcc > 1:15296010‑M1/1‑68 (MQ=255) CCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCat > 1:7130245‑M1/1‑68 (MQ=255) TTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCatatat < 1:10283674‑M1/68‑1 (MQ=255) TTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCatatat < 1:25670595‑M1/68‑1 (MQ=255) tgttttgcctgcgcctgcgggcgcatgggctaaacataagttaactggaggCATTGTCGCCatat < 1:25440741‑M2/14‑1 (MQ=255) TAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCatata > 1:3734462‑M1/1‑66 (MQ=255) TAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCatata > 1:24811477‑M1/1‑66 (MQ=255) TAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATAtt < 1:28571165‑M1/68‑1 (MQ=255) TAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATAtt < 1:18834388‑M1/68‑1 (MQ=255) TAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATAtt < 1:18498811‑M1/68‑1 (MQ=255) TAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATAtt < 1:10862127‑M1/68‑1 (MQ=255) aCTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTc < 1:23346787/68‑1 (MQ=255) aCTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTc > 1:19549085/1‑68 (MQ=255) aCTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTc > 1:1943687/1‑68 (MQ=255) aCTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTc < 1:27795956/68‑1 (MQ=255) aCTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTc < 1:25022986/68‑1 (MQ=255) aCTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTc < 1:26243051/68‑1 (MQ=255) cTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTc > 1:293339/1‑67 (MQ=255) ttATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCg > 1:4457563/1‑67 (MQ=255) tATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgcc > 1:7890408/1‑68 (MQ=255) tGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccag < 1:16829027/68‑1 (MQ=255) tGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgcca > 1:14085317/1‑67 (MQ=255) tGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgcca > 1:20932069/1‑67 (MQ=255) gTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGCGGCATTGTCGCCATATATTTCgccag > 1:22597219/1‑67 (MQ=255) gTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTTGCCATATATTTCgccag > 1:12127816/1‑67 (MQ=255) gTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccag > 1:16954550/1‑67 (MQ=255) ctgcgcctgcgggcgcatgggctaaacataagttaactggaggCATTGTCGCCATATATTTCgccag < 1:6850454‑M2/24‑1 (MQ=255) tttAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccagcc > 1:27925128/1‑68 (MQ=255) ttAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCTTTGTCGCCATATATTTCgcccgcca > 1:27114236/1‑68 (MQ=255) ttAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccagcca > 1:27457161/1‑68 (MQ=255) ttAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccagcca > 1:7279131/1‑68 (MQ=255) ttAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccagcca > 1:8182449/1‑68 (MQ=255) ttAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccagcca > 1:9782300/1‑68 (MQ=255) ttAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccagcca > 1:21278826/1‑68 (MQ=255) ttAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccagcca > 1:20018667/1‑68 (MQ=255) ttAGCCCATGCGCCCGCAGGCGCAGACAAAACAACTGGAGGCATTGTCGCCATATATTTCgccagcca > 1:8320322/1‑68 (MQ=255) aGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGt < 1:3085845/68‑1 (MQ=255) aGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGt < 1:14563947/68‑1 (MQ=255) gCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGt > 1:2164827/1‑67 (MQ=255) gCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGt > 1:13467445/1‑67 (MQ=255) ctgcgggcgcatgggctaaacataagtaaactggaggCATTGTCGCCATATATTTCGCCAGCCAGtt < 1:28124484‑M2/30‑1 (MQ=255) cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc > 1:17285067/1‑68 (MQ=255) cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc > 1:10116497/1‑68 (MQ=255) cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc > 1:15787404/1‑68 (MQ=255) cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc > 1:28826601/1‑68 (MQ=255) cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc > 1:4016335/1‑68 (MQ=255) cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc > 1:612942/1‑68 (MQ=255) cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc > 1:12995264/1‑68 (MQ=255) cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc > 1:11677096/1‑68 (MQ=255) cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc > 1:11241272/1‑68 (MQ=255) cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc > 1:11075680/1‑68 (MQ=255) cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc > 1:92976/1‑68 (MQ=255) cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc > 1:22792626/1‑68 (MQ=255) cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc > 1:24205456/1‑68 (MQ=255) cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc > 1:24526058/1‑68 (MQ=255) cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGGTc > 1:7738358/1‑68 (MQ=255) cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCAGTGTCGCCATATATTTCGCCAGCCAGTTc > 1:29068901/1‑68 (MQ=255) ccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCa > 1:9068816/1‑68 (MQ=255) ccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCa > 1:23020233/1‑68 (MQ=255) ccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCa > 1:19719949/1‑68 (MQ=255) tGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATg > 1:18099682/1‑67 (MQ=255) cgcaggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAgcgcgcgc < 1:28305268/67‑1 (MQ=255) cgcaggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAgcgcgcgc < 1:25292902/67‑1 (MQ=255) cgcaggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAgcgcgcgc < 1:19172138/67‑1 (MQ=255) gcaggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCt < 1:1641729/67‑1 (MQ=255) gcaggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCt < 1:5036266/67‑1 (MQ=255) gcaggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCt < 1:14338538/67‑1 (MQ=255) gcaggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTc < 1:2651245/68‑1 (MQ=255) aggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCa < 1:8988184/67‑1 (MQ=255) aggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCa < 1:26149438/67‑1 (MQ=255) aggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCa < 1:29731378/67‑1 (MQ=255) aggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCa < 1:23960164/67‑1 (MQ=255) ggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt < 1:21763262/68‑1 (MQ=255) gcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATa > 1:5458164/1‑68 (MQ=255) gcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATa > 1:11451631/1‑68 (MQ=255) ctaaaCAACTGGAGGCATTGTCGCCATATATTTCGGCAGCCAGTTCATGGCCAGCGCGCGCTCAAt < 1:13794119/64‑1 (MQ=255) cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt < 1:15030388/66‑1 (MQ=255) cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt < 1:21191202/66‑1 (MQ=255) cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt < 1:6607400/66‑1 (MQ=255) cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt < 1:18342599/66‑1 (MQ=255) cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt < 1:17697054/66‑1 (MQ=255) cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt < 1:18708083/66‑1 (MQ=255) cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt < 1:20622546/66‑1 (MQ=255) cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt < 1:22240638/66‑1 (MQ=255) aacaacTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTgg < 1:26651072/68‑1 (MQ=255) caacTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGAt > 1:17219124/1‑68 (MQ=255) aactggaggCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGAtt < 1:10624668‑M2/59‑1 (MQ=255) gCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCg > 1:14678725‑M2/2‑68 (MQ=255) gCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCg > 1:3377557‑M2/2‑68 (MQ=255) cATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCg < 1:15558285/67‑1 (MQ=255) | CTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGG > CP009273/2323861‑2323995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |