| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3263959 | 146 (0.410) | 8 (0.030) | 6/96 | NT | 5.5% | intergenic (‑8/+25) | rnpB/garK | RNase P, M1 RNA component/glycerate kinase I |
| ? | CP009273 | = 3263971 | 148 (0.480) | intergenic (‑20/+13) | rnpB/garK | RNase P, M1 RNA component/glycerate kinase I | |||||
Only 100 of 371 total aligned reads displayed.
CCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATA > CP009273/3263892‑3264026 | ccctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCA < 1:18321242‑M1/68‑1 (MQ=255)ccctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCA > 1:7797596‑M1/1‑68 (MQ=255) cctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAg > 1:25340459/1‑68 (MQ=255) cctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAg > 1:1113697/1‑68 (MQ=255) cctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAg > 1:434934/1‑68 (MQ=255) cctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAg > 1:28896566/1‑68 (MQ=255) cctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAg < 1:8313196/68‑1 (MQ=255) cctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAg > 1:7522540/1‑68 (MQ=255) cctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAg > 1:13381568/1‑68 (MQ=255) ctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGt < 1:14168064/68‑1 (MQ=255) ctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGt < 1:25778022/68‑1 (MQ=255) ctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGt < 1:5174787/68‑1 (MQ=255) ctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGt < 1:16170016/68‑1 (MQ=255) ctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGt < 1:1480555/68‑1 (MQ=255) ctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGt < 1:8107520/68‑1 (MQ=255) ctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGt < 1:13092671/68‑1 (MQ=255) ctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGt < 1:11513861/68‑1 (MQ=255) ctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGt < 1:11363533/68‑1 (MQ=255) ctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGt < 1:29060177/68‑1 (MQ=255) ctccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGt < 1:6244709/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAGGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:26664780/68‑1 (MQ=255) tccGCCCGTCTCCCCCGACGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:18726578/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGCGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:11963958/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:20936314/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:2106654/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:22464442/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:23569606/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:2968435/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:25588155/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta > 1:25922331/1‑68 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:26131175/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:27037160/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:4491309/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:27913096/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:3522709/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:28247993/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:3209704/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:29400157/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:8986833/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:1632451/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:1645688/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:6505007/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:17230223/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGta < 1:17425133/68‑1 (MQ=255) tccGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGGCAGCTTCGGCGCGCAGta < 1:1933588/68‑1 (MQ=255) ccGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATagag > 1:5852236/1‑68 (MQ=255) ccGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATagag > 1:28427570/1‑68 (MQ=255) ccGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATagag > 1:4626853/1‑68 (MQ=255) cGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAgg < 1:21710879/68‑1 (MQ=255) gTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAggg < 1:15059048/68‑1 (MQ=255) tctcCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGt > 1:10170908/1‑68 (MQ=255) tctcCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGt > 1:568667/1‑68 (MQ=255) cccccGACGAGGCCGACGACGACGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTtg > 1:17729672‑M2/1‑66 (MQ=255) cccccGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAaaccctctatactg < 1:14722091‑M1/68‑15 (MQ=255) cccccGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTtg > 1:24610169‑M2/1‑66 (MQ=255) ccccGACGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTtgc > 1:5451981‑M2/1‑65 (MQ=255) cccGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTtgc < 1:10283666‑M2/67‑4 (MQ=255) cccGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTtgc < 1:7818688‑M2/67‑4 (MQ=255) agagGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTtgcgcgc < 1:26331357‑M2/66‑8 (MQ=255) agagGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTtgcgcgc < 1:21266983‑M2/66‑8 (MQ=255) agagGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGccc < 1:19080346/68‑1 (MQ=255) agagGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGccc < 1:3003266/68‑1 (MQ=255) agagGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGccc < 1:18475930/68‑1 (MQ=255) agagGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGccc < 1:18070357/68‑1 (MQ=255) agagGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGccc < 1:27306721/68‑1 (MQ=255) agagGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGccc < 1:19534610/68‑1 (MQ=255) agagGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGCGTTCGCGCGccc < 1:20486140/68‑1 (MQ=255) agagGACGACGACGAAGCGGCGACTGTCTGGTCACCTTCGGCGCGCAGTATAGAGGGTTttcgcgc < 1:19814950‑M2/66‑8 (MQ=255) acgacgacgAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTc > 1:10981217/1‑68 (MQ=255) gacgaAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCAcccc > 1:6742082/1‑68 (MQ=255) cgaAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCcgc < 1:10447214/68‑1 (MQ=255) gaAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCcgcg > 1:25180413/1‑68 (MQ=255) aCTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCAt > 1:861331/1‑67 (MQ=255) aCTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCAt > 1:15808790/1‑67 (MQ=255) cTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCAtt < 1:12697267/67‑1 (MQ=255) cTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCAtt < 1:14347561/67‑1 (MQ=255) tCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCaa > 1:4931248/1‑68 (MQ=255) cAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCa > 1:7189619/1‑68 (MQ=255) ttCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAgt < 1:4013385/66‑1 (MQ=255) tCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTc > 1:2033240/1‑68 (MQ=255) agggCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTc > 1:23042151/3‑68 (MQ=255) gggCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTc > 1:9441977/2‑67 (MQ=255) gcgcgcAaaccctctatactgcgcgccgaagctgaccagacagtcgccgcttcgtcgtcgtcctcttc > 1:6835879‑M1/1‑7 (MQ=255) cgcgcAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTcgcg > 1:22934073/1‑67 (MQ=255) cgcgcAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTcgcg < 1:3876258/67‑1 (MQ=255) cgcgcAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTcgcg < 1:9883366/67‑1 (MQ=255) cgcgcAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTAGCGCATTCCAATCGCCAGTGTcgcg > 1:24313095/1‑67 (MQ=255) gcgcAaaccctctatactgcgcgccgaagctgaccagacagtcgccgcttcgtcgtcgtcctcttcgg > 1:8953263‑M1/1‑5 (MQ=255) gcgcAaaccctctatactgcgcgccgaagctgaccagacagtcgccgcttcgtcgtcgtcctcttcg < 1:23976804‑M1/67‑63 (MQ=255) gcgcAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCgcgg < 1:27550687/67‑1 (MQ=255) gcAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGa > 1:12272219/1‑68 (MQ=255) gcAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGa < 1:27837260/68‑1 (MQ=255) gcAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGa > 1:28056757/1‑68 (MQ=255) cAaaccctctatactgcgcgccgaagctgaccagccagtcgccgcttcgtcgtcgtcctcttcggggg > 1:29201293‑M1/1‑2 (MQ=255) cAaaccctctatactgcgcgccgaagctgaccagacagtcgccgcttcgtcgtcgtcctcttcggggg > 1:29611660‑M1/1‑2 (MQ=255) aaaccctctatactgcgcgccgaagctgaccagacagtcgccgcttcgtcgtcgtcctcttcggggga > 1:1709196‑M1/1‑1 (MQ=255) aaaccctctatactgcgcgccgaagctgaccagacagtcgccgcttcgtcgtcgtcctcttcggggg < 1:13654047‑M1/67‑67 (MQ=255) aGTATAGTGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGat < 1:16781817/67‑1 (MQ=255) aGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGat < 1:13819029/67‑1 (MQ=255) aGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGat < 1:20157/67‑1 (MQ=255) | CCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATA > CP009273/3263892‑3264026 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |