| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3263959 | 146 (0.410) | 8 (0.030) | 6/96 | NT | 5.5% | intergenic (‑8/+25) | rnpB/garK | RNase P, M1 RNA component/glycerate kinase I |
| ? | CP009273 | = 3263971 | 148 (0.480) | intergenic (‑20/+13) | rnpB/garK | RNase P, M1 RNA component/glycerate kinase I | |||||
Only 100 of 387 total aligned reads displayed.
TCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGAA > CP009273/3263905‑3264035 | tCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTt > 1:1709196‑M2/1‑67 (MQ=255) cccccGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTtg > 1:29611660‑M2/1‑66 (MQ=255) cccGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTtgc < 1:27999707‑M2/67‑4 (MQ=255) ccGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTtgcgc < 1:28996394‑M2/68‑6 (MQ=255) agagGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGccc < 1:27306721/68‑1 (MQ=255) agagGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGccc < 1:6774015/68‑1 (MQ=255) agagGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGccc < 1:5583639/68‑1 (MQ=255) agagGACGACGACGAAGCGCCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTtgcgcgc < 1:8991264‑M2/66‑8 (MQ=255) agGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCtt > 1:16452325/1‑68 (MQ=255) agGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCtt > 1:21074319/1‑68 (MQ=255) agGACGACAACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCtt > 1:26949911/1‑68 (MQ=255) acgacgacgAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTc > 1:16116078/1‑68 (MQ=255) acgacgacgAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTc > 1:3389522/1‑68 (MQ=255) acgacgacgAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTc > 1:18911427/1‑68 (MQ=255) cgacgacgaCGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTtgcgcgccgaagctg > 1:20322763‑M2/1‑53 (MQ=255) acgacgaAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCAc > 1:27384057/1‑67 (MQ=255) acgacgaAGCGGCGACTGTCT‑GTCAGCTTACGCGCGCAGTAAAGCGGGTTTTCCCGCCCATGTAAcc > 1:14758947/1‑67 (MQ=255) gacgaAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCAcccc > 1:17996168/1‑68 (MQ=255) cgaAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCcgc < 1:27566809/68‑1 (MQ=255) cgaAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCcgc < 1:10447214/68‑1 (MQ=255) ggcgACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCTTTgc < 1:18368820/67‑1 (MQ=255) ggcgACTGGCTTGGCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTgc < 1:10190919/67‑1 (MQ=255) aCTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCAt > 1:861331/1‑67 (MQ=255) tGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTcc < 1:25137660/68‑1 (MQ=255) tCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCaa > 1:23037202/1‑68 (MQ=255) cTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCaa < 1:18506868/67‑1 (MQ=255) ggTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATc > 1:20127305/1‑67 (MQ=255) ttCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAgtg > 1:16783010/1‑67 (MQ=255) ttCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAgtg < 1:28390827/67‑1 (MQ=255) ttCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAgt < 1:14422581/66‑1 (MQ=255) ttCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAgt < 1:4013385/66‑1 (MQ=255) gggCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTc > 1:8228206/2‑67 (MQ=255) cgcgcAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTcgcg > 1:25364332/1‑67 (MQ=255) cgcgcAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTcgcg > 1:6640457/1‑67 (MQ=255) cgcgcAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTcgcg < 1:9883366/67‑1 (MQ=255) cgcgcAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTcgcg < 1:11018904/67‑1 (MQ=255) cgcgcAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTAGCGCATTCCAATCGCCAGTGTcgcg > 1:24313095/1‑67 (MQ=255) gcAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGa < 1:27837260/68‑1 (MQ=255) aGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGat < 1:13705599/67‑1 (MQ=255) ataGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGatat < 1:25871848/66‑1 (MQ=255) ataGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGatat < 1:7392505/66‑1 (MQ=255) ataGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATAtt > 1:12229598/1‑67 (MQ=255) ataGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATAtt > 1:17441703/1‑67 (MQ=255) ataGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATAtt > 1:7877917/1‑67 (MQ=255) ataGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATAtt > 1:19067801/1‑67 (MQ=255) ataGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTa < 1:26765393/68‑1 (MQ=255) taGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTAc < 1:26165123/68‑1 (MQ=255) gagGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATTTTACGt > 1:28677749/1‑68 (MQ=255) gagGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGt > 1:15876058/1‑68 (MQ=255) agGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTg > 1:25544501/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTc > 1:7664962/1‑37 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:3925416/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:12870382/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:12565828/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:4445777/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:4871098/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:5322902/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:2978509/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:6436312/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:5901090/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:19614994/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:6506703/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:11965076/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:11729494/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:7117771/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:7460326/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:11499197/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:11291323/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:8788221/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:9425749/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:9589020/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:28875823/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:19256980/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:19994113/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:18712627/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:20402054/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:21271745/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:2176419/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:2202956/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:22711064/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:23781952/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:24074996/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:24695640/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:16505858/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:25330834/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:16247521/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:26370898/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:26497774/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:15754398/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:15537345/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:15239314/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:14637781/1‑68 (MQ=255) gggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGa > 1:14156994/1‑68 (MQ=255) gggTTTCCGCGCCCTTGTCACCCCGCCTTCCGCATTCCAATCGCCAGTGTCGCCGCGATATTACCTGa > 1:10022559/1‑68 (MQ=255) ggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGaa > 1:4319230/1‑68 (MQ=255) ggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGaa > 1:20563436/1‑68 (MQ=255) ggTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGaa > 1:13338993/1‑68 (MQ=255) gTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGaa > 1:695723/1‑67 (MQ=255) gTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGaa > 1:4616672/1‑67 (MQ=255) gTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGaa < 1:18176214/67‑1 (MQ=255) | TCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTGCGCGCCCTTGTCACCCCGCGTTGCGCATTCCAATCGCCAGTGTCGCGGCGATATTACGTGAA > CP009273/3263905‑3264035 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |